Effective results for Streptococcus mitis bv. 2 str. F0392 (eggnog40)

Summary

Number of putative secreted proteins: 89
- Predicted by T4SEpre: 88
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 16 proteins (2 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
768726.HMPREF9178_1403+ER
768726.HMPREF9178_0249+(mitochondrial)
768726.HMPREF9178_0808+ER
768726.HMPREF9178_0929+ER
768726.HMPREF9178_1332+ER
768726.HMPREF9178_0137+ER
768726.HMPREF9178_1781(PF00344)mitochondrial
768726.HMPREF9178_0667+ER
768726.HMPREF9178_0512(PF04991)(ER)
768726.HMPREF9178_0848+mitochondrial
768726.HMPREF9178_0685+(ER)
768726.HMPREF9178_0670+(mitochondrial); (plastid)
768726.HMPREF9178_1246+ER; (ER)
768726.HMPREF9178_0221+mitochondrial
768726.HMPREF9178_1472(PF00344)mitochondrial
768726.HMPREF9178_1908+ER
768726.HMPREF9178_0989PF04103ER
768726.HMPREF9178_1265+ER
768726.HMPREF9178_1132+(mitochondrial)
768726.HMPREF9178_1857+ER
768726.HMPREF9178_1639(PF03644)(mitochondrial)
768726.HMPREF9178_0946PF02916ER
768726.HMPREF9178_1276+mitochondrial; (mitochondrial)
768726.HMPREF9178_1561+ER
768726.HMPREF9178_1761(PF03083)ER
768726.HMPREF9178_1399+ER
768726.HMPREF9178_0167+ER
768726.HMPREF9178_0169+ER
768726.HMPREF9178_0168+ER
768726.HMPREF9178_1828(PF01633)(mitochondrial)
768726.HMPREF9178_1793+plastid
768726.HMPREF9178_1591(PF08975)(mitochondrial)
768726.HMPREF9178_1553+(mitochondrial)
768726.HMPREF9178_0909+
768726.HMPREF9178_0837+
768726.HMPREF9178_1577+
768726.HMPREF9178_1355+
768726.HMPREF9178_1212+
768726.HMPREF9178_0105+
768726.HMPREF9178_0321+
768726.HMPREF9178_0633+
768726.HMPREF9178_0638+
768726.HMPREF9178_0256+
768726.HMPREF9178_1513+
768726.HMPREF9178_1907+
768726.HMPREF9178_1833+
768726.HMPREF9178_1788+
768726.HMPREF9178_1306+
768726.HMPREF9178_1018+
768726.HMPREF9178_0491+
768726.HMPREF9178_1792+
768726.HMPREF9178_1799+
768726.HMPREF9178_1002+
768726.HMPREF9178_0469+
768726.HMPREF9178_0510(PF04991)
768726.HMPREF9178_0755+
768726.HMPREF9178_1675+
768726.HMPREF9178_0509(PF04991)
768726.HMPREF9178_1062(PF12949)
768726.HMPREF9178_0046+
768726.HMPREF9178_0224+
768726.HMPREF9178_0227(PF06414)
768726.HMPREF9178_1477+
768726.HMPREF9178_1471+
768726.HMPREF9178_1278+
768726.HMPREF9178_1585(PF06414)
768726.HMPREF9178_1299+
768726.HMPREF9178_0239+
768726.HMPREF9178_1598+
768726.HMPREF9178_1047+
768726.HMPREF9178_0884+
768726.HMPREF9178_0896+
768726.HMPREF9178_1714+
768726.HMPREF9178_0577+
768726.HMPREF9178_1439+
768726.HMPREF9178_1894+
768726.HMPREF9178_1540+
768726.HMPREF9178_0145(PF01633)
768726.HMPREF9178_0738+
768726.HMPREF9178_1427(PF03083)
768726.HMPREF9178_1372+
768726.HMPREF9178_0926+
768726.HMPREF9178_0177+
768726.HMPREF9178_0595+
768726.HMPREF9178_0196+
768726.HMPREF9178_1962+
768726.HMPREF9178_1317+
768726.HMPREF9178_1762+
768726.HMPREF9178_0160+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================