Effective results for Capnocytophaga canimorsus Cc5 (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 34 proteins (12 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
860228.Ccan_16450(PF09112) (PF09113)ER
860228.Ccan_04040(PF13287)ER
860228.Ccan_14270(PF02494)ER
860228.Ccan_02260(PF13583)(mitochondrial)
860228.Ccan_13240(PF02494)ER
860228.Ccan_02270(PF13583)ER
860228.Ccan_03860(PF13287)ER
860228.Ccan_02280(PF13583)ER
860228.Ccan_07870(PF13583)ER
860228.Ccan_17430(PF13402)(mitochondrial)
860228.Ccan_08830(PF13287)ER; (ER)
860228.Ccan_22670PF03400(plastid)
860228.Ccan_11410PF03400(plastid)
860228.Ccan_12780PF03400(plastid)
860228.Ccan_22130(PF05076)
860228.Ccan_21840PF03400
860228.Ccan_10540(PF13589)
860228.Ccan_04270(PF13589)
860228.Ccan_11450PF03400
860228.Ccan_23810(PF05076)
860228.Ccan_21880(PF05076)
860228.Ccan_08160(PF13402)
860228.Ccan_12680PF03400
860228.Ccan_15310(PF14771)
860228.Ccan_08340(PF13589)
860228.Ccan_11420PF03400
860228.Ccan_16140PF03400
860228.Ccan_12310PF03400
860228.Ccan_16540PF02893
860228.Ccan_13670PF03400
860228.Ccan_08270PF03400
860228.Ccan_10510(PF13589)
860228.Ccan_04060(PF05693)
860228.Ccan_00320(PF13589)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================