Effective results for Centipeda periodontii DSM 2778 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 32 proteins (3 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
888060.HMPREF9081_0497(PF01871)ER; (ER)
888060.HMPREF9081_0752(PF07927)(mitochondrial)
888060.HMPREF9081_2208(PF07927)(mitochondrial)
888060.HMPREF9081_1543(PF07927)(mitochondrial)
888060.HMPREF9081_1061(PF14566)ER
888060.HMPREF9081_0474(PF09370)(mitochondrial)
888060.HMPREF9081_0476(PF09370)ER
888060.HMPREF9081_1622(PF13541) (PF01078)
888060.HMPREF9081_1753(PF13541) (PF01078)
888060.HMPREF9081_1791PF00349 PF03727
888060.HMPREF9081_0876PF00349 PF03727
888060.HMPREF9081_0462(PF14021)(mitochondrial)
888060.HMPREF9081_1683(PF13541) (PF01078)
888060.HMPREF9081_1770(PF13541)
888060.HMPREF9081_0698(PF09811)
888060.HMPREF9081_1618(PF13844)
888060.HMPREF9081_1987(PF01078)
888060.HMPREF9081_0962(PF07927)
888060.HMPREF9081_2183(PF07927)not used
888060.HMPREF9081_1565(PF12646)
888060.HMPREF9081_0244(PF07927)
888060.HMPREF9081_2050(PF01871)
888060.HMPREF9081_0148(PF13844)
888060.HMPREF9081_0147(PF13844)
888060.HMPREF9081_0337PF11443
888060.HMPREF9081_1599(PF12821)
888060.HMPREF9081_0443(PF14021)
888060.HMPREF9081_1464(PF02475)
888060.HMPREF9081_0999(PF12821)
888060.HMPREF9081_0998(PF12821)
888060.HMPREF9081_1013(PF13844)
888060.HMPREF9081_0515(PF13844)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================