Effective results for Vibrio furnissii NCTC 11218 (eggnog40)

Summary

Number of putative secreted proteins: 633
- Predicted by EffectiveT3: 202 (high confidence), 319 (low confidence)
- Predicted by EffectiveCCBD: 24 within, 20 before, 54 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 38 proteins (0 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
903510.vfu_A00396++(plastid)
903510.vfu_A00709+mitochondrial
903510.vfu_A00700+(mitochondrial); (plastid)
903510.vfu_B00431+(ER); ER
903510.vfu_A02837+mitochondrial; plastid
903510.vfu_A01573(>)ER
903510.vfu_A00155+(mitochondrial)
903510.vfu_B01317(>)ER
903510.vfu_B01080+(mitochondrial); (plastid)
903510.vfu_A01116+(mitochondrial); plastid
903510.vfu_B01302+ER
903510.vfu_A00987+ER
903510.vfu_A00212(>)ER
903510.vfu_A02859(>)(ER)
903510.vfu_B00323(>)mitochondrial
903510.vfu_A00172+ER; (ER)
903510.vfu_B01334(PF00194)ER
903510.vfu_B00597(PF00194)ER
903510.vfu_A01132+(PF00669)(plastid)
903510.vfu_A01134+(PF00669)plastid
903510.vfu_A00699(>)ER
903510.vfu_A00343(>)(ER)
903510.vfu_A02476+ER
903510.vfu_A02264++(plastid)
903510.vfu_A01936(PF08180)ER
903510.vfu_A02861+ER
903510.vfu_B00823(>)ER
903510.vfu_A02807+ER
903510.vfu_A00327(PF01228)mitochondrial; (mitochondrial)
903510.vfu_A02098+(mitochondrial)
903510.vfu_A01924+(ER)
903510.vfu_A02664(<)(ER)
903510.vfu_A02244+(PF00669)(plastid)
903510.vfu_A02240+(PF00669)(plastid)
903510.vfu_A02242+(PF00669)(plastid)
903510.vfu_B01170(>)ER
903510.vfu_B00446(PF05548)ER
903510.vfu_A03063(>)(mitochondrial)
903510.vfu_A02653+ER
903510.vfu_B01038(>)ER
903510.vfu_A02437+ER
903510.vfu_A02925(<)mitochondrial; (mitochondrial)
903510.vfu_A01516+ER
903510.vfu_A00462+(ER)
903510.vfu_B01156+(mitochondrial); (plastid)
903510.vfu_B01027(PF02010)ER
903510.vfu_B01338(>)ER
903510.vfu_A02742+(mitochondrial)
903510.vfu_A02296+ER
903510.vfu_A02366(>)ER
903510.vfu_A01856+ER
903510.vfu_B00724(PF00031)ER
903510.vfu_A01180+(PF00669)plastid
903510.vfu_A01220+ER
903510.vfu_A00065(>)mitochondrial
903510.vfu_B01224(>)ER
903510.vfu_A01157(>)(mitochondrial)
903510.vfu_A01158+ER
903510.vfu_A00237(>)ER
903510.vfu_B01046(>)ER
903510.vfu_B01107+ER; (ER)
903510.vfu_A03030(>)ER
903510.vfu_A02964(>)ER
903510.vfu_B01071(>)(mitochondrial)
903510.vfu_A01392+(PF00669)plastid
903510.vfu_A00131+ER
903510.vfu_A01178+(PF00669)plastid
903510.vfu_A00384(+)ER
903510.vfu_A02234+(mitochondrial)
903510.vfu_B01276+(plastid)
903510.vfu_A02238++
903510.vfu_A03067+(plastid)
903510.vfu_B01306(+)mitochondrial; (mitochondrial)
903510.vfu_B01410(+)ER
903510.vfu_B01327+(<)
903510.vfu_A01358++
903510.vfu_A02142+(plastid)
903510.vfu_A02113(+)(PF08732)(ER)
903510.vfu_A00371+(plastid)
903510.vfu_B01404(+)ER; (ER)
903510.vfu_A01425(+)(mitochondrial); plastid
903510.vfu_A02937(+)(ER)
903510.vfu_A02442(PF02696)(plastid)
903510.vfu_A01654(+)ER
903510.vfu_A00527+(plastid)
903510.vfu_A01124+(plastid)
903510.vfu_B01198(+)ER
903510.vfu_B01510+(plastid)
903510.vfu_B00552(+)(ER)
903510.vfu_B00119(+)mitochondrial
903510.vfu_A01475(+)(ER)
903510.vfu_A00322(+)ER
903510.vfu_A02095(+)(mitochondrial); (plastid)
903510.vfu_A02094+(mitochondrial)
903510.vfu_A00656(+)(mitochondrial)
903510.vfu_A01817+(plastid)
903510.vfu_A02777++
903510.vfu_A00804(+)ER
903510.vfu_A02798(+)ER
903510.vfu_A02331(+)(mitochondrial); (plastid)
903510.vfu_B00712+(ER)
903510.vfu_A02676+(ER)
903510.vfu_A01479(+)(ER); (mitochondrial)
903510.vfu_A01456+ER; not used
903510.vfu_A01872(+)ER
903510.vfu_A00863(+)(ER)
903510.vfu_B00462(+)(mitochondrial)
903510.vfu_A00922(+)(ER)
903510.vfu_A01181(+)(PF00669)plastid
903510.vfu_A01388+(plastid)
903510.vfu_A01881+(mitochondrial)
903510.vfu_B00086(+)ER
903510.vfu_B00210+(mitochondrial)
903510.vfu_A00646+(plastid)
903510.vfu_A01897(+)ER; (ER)
903510.vfu_B00276+(plastid)
903510.vfu_A00533(+)(mitochondrial); plastid
903510.vfu_A02522+(mitochondrial); not used
903510.vfu_A01391+(>)
903510.vfu_A02155(+)mitochondrial
903510.vfu_A00608(+)(ER)
903510.vfu_B01256(+)(mitochondrial); plastid
903510.vfu_A01868(+)ER
903510.vfu_A02010+(>)
903510.vfu_A00705+
903510.vfu_A00144+
903510.vfu_A00149+
903510.vfu_B00960(<)
903510.vfu_B00781+
903510.vfu_B01272+
903510.vfu_A03051+
903510.vfu_B00651+
903510.vfu_A02492+
903510.vfu_A02834+
903510.vfu_A01378+
903510.vfu_A02711(>)
903510.vfu_A01243(+)(<)
903510.vfu_A00975(+)(ER)
903510.vfu_A00419(+)(ER); not used
903510.vfu_A02009+
903510.vfu_A02236+
903510.vfu_A00399+
903510.vfu_B01310(PF06961)
903510.vfu_B01311(PF12464)
903510.vfu_B00187(>)
903510.vfu_B00228(>)
903510.vfu_B00357+
903510.vfu_A02762+
903510.vfu_A01118(>)
903510.vfu_A02826+
903510.vfu_A01564(<)
903510.vfu_A01360(+)(plastid)
903510.vfu_A01366(PF00669)
903510.vfu_A02721+
903510.vfu_A02720+
903510.vfu_A01212+
903510.vfu_A00983+
903510.vfu_A01589+
903510.vfu_A00099(<)
903510.vfu_A01630+not used
903510.vfu_A01636+
903510.vfu_A02103+
903510.vfu_A00768+
903510.vfu_B01418+
903510.vfu_A03073(+)(>)
903510.vfu_B00693+
903510.vfu_B00624+
903510.vfu_B00341(+)(plastid)
903510.vfu_A02584(+)(PF01228)
903510.vfu_A02851+
903510.vfu_A01031(>)
903510.vfu_A02737+not used
903510.vfu_A00433+
903510.vfu_A00774+
903510.vfu_A03088+
903510.vfu_A00208+
903510.vfu_B00113(PF06961)
903510.vfu_A00193(>)
903510.vfu_A01131(PF00669)
903510.vfu_A01130+
903510.vfu_A01139(+)(mitochondrial)
903510.vfu_B00572+
903510.vfu_A01439+not used
903510.vfu_B00371+
903510.vfu_A02441(PF02696)
903510.vfu_A00834(>)
903510.vfu_A00837+
903510.vfu_A00349+
903510.vfu_A01458+
903510.vfu_B01431+
903510.vfu_A00522(>)
903510.vfu_A01836(+)(mitochondrial)
903510.vfu_B01507(>)
903510.vfu_B01502+
903510.vfu_B00747+
903510.vfu_B00745(PF02696)
903510.vfu_A01126+
903510.vfu_A01122(+)plastid
903510.vfu_B00565+
903510.vfu_A02872(>)
903510.vfu_B00360+
903510.vfu_A02477+
903510.vfu_A02132+
903510.vfu_A02209+
903510.vfu_A01482+
903510.vfu_A00820+
903510.vfu_A00825+
903510.vfu_A02265+
903510.vfu_A02262+
903510.vfu_A00227+
903510.vfu_A00291+
903510.vfu_B01354(PF06961)
903510.vfu_A03135+
903510.vfu_B00258+
903510.vfu_A00297+
903510.vfu_A00584(>)
903510.vfu_B01538+
903510.vfu_B00175+
903510.vfu_B00489+
903510.vfu_A01326(>)
903510.vfu_A02863+
903510.vfu_B00395(PF05929)
903510.vfu_A01258(+)(mitochondrial)
903510.vfu_A01257(<)
903510.vfu_A01183(<)
903510.vfu_A02780+
903510.vfu_A02254(PF00669)
903510.vfu_A00785+
903510.vfu_A00784+
903510.vfu_A02327+
903510.vfu_A01863+
903510.vfu_A01812(+)(plastid)
903510.vfu_A01816+
903510.vfu_B01361+
903510.vfu_B01364+
903510.vfu_B00766+
903510.vfu_B01380+
903510.vfu_B01383+
903510.vfu_B00549+
903510.vfu_A02894(PF01228)
903510.vfu_B00382+
903510.vfu_A02418+
903510.vfu_B01112+
903510.vfu_A02064+
903510.vfu_A02065+
903510.vfu_A01973(>)
903510.vfu_A02669+
903510.vfu_A02342+
903510.vfu_A02083+
903510.vfu_A02086(+)(PF12464)
903510.vfu_A02221+
903510.vfu_A02248+
903510.vfu_A01861(>)
903510.vfu_B01375+
903510.vfu_B00719+
903510.vfu_B01398+
903510.vfu_B00021(PF12464)
903510.vfu_B00156(PF02182)
903510.vfu_B00155+
903510.vfu_A02880(<)
903510.vfu_A01782+
903510.vfu_B01101+
903510.vfu_A02302(>)
903510.vfu_A02207(<)
903510.vfu_A01227+
903510.vfu_A01999(<)
903510.vfu_A01559+
903510.vfu_A00013+
903510.vfu_A00010+
903510.vfu_A00474+
903510.vfu_B01033+
903510.vfu_B00149(>)
903510.vfu_B00154(+)(plastid)
903510.vfu_A00862+
903510.vfu_A00030+
903510.vfu_A01424+
903510.vfu_A00649+
903510.vfu_A00313+
903510.vfu_A01357(+)plastid
903510.vfu_B00240+not used
903510.vfu_A01195+
903510.vfu_A01193(>)
903510.vfu_A03001+
903510.vfu_B00863(>)
903510.vfu_A01218(>)
903510.vfu_A02519+
903510.vfu_A02511+
903510.vfu_A02517(PF05929)
903510.vfu_B01369+
903510.vfu_A01501(+)(ER)
903510.vfu_A01435+
903510.vfu_A02957+
903510.vfu_A01728(+)plastid
903510.vfu_A02294(PF12464)
903510.vfu_A00072+
903510.vfu_B00188+
903510.vfu_A00078+
903510.vfu_A02168+
903510.vfu_A02361+
903510.vfu_A00453(PF05706)
903510.vfu_B01232(>)
903510.vfu_A01853+
903510.vfu_B01051+
903510.vfu_A03017+
903510.vfu_B00544+
903510.vfu_B00618+
903510.vfu_B00184+
903510.vfu_A01364+
903510.vfu_A02458+
903510.vfu_A02626+
903510.vfu_A02272+
903510.vfu_B00136(>)
903510.vfu_A02196+
903510.vfu_A00939(<)
903510.vfu_A00444(+)(plastid)
903510.vfu_A00064+
903510.vfu_A00292(<)
903510.vfu_A02375+
903510.vfu_A00520+
903510.vfu_A02372(PF01228)
903510.vfu_A02373(PF01228)not used
903510.vfu_A00119(<)
903510.vfu_B01223+
903510.vfu_A01888+
903510.vfu_B00261+
903510.vfu_B00265(>)
903510.vfu_A03023(>)
903510.vfu_A03028+
903510.vfu_B00407+
903510.vfu_A02578(<)
903510.vfu_B00922+
903510.vfu_A02034(>)
903510.vfu_A01415+
903510.vfu_B01347+
903510.vfu_A00643(<)
903510.vfu_A02145+
903510.vfu_A00124(<)
903510.vfu_B01108+
903510.vfu_A03143+
903510.vfu_B00672(<)
903510.vfu_A02969+
903510.vfu_B01076+
903510.vfu_B00072+
903510.vfu_B00097+
903510.vfu_A01384+
903510.vfu_A02600+
903510.vfu_A02768(<)
903510.vfu_A02770+
903510.vfu_A01830(>)
903510.vfu_A00760(>)
903510.vfu_A01778+
903510.vfu_A00732+
903510.vfu_A02154+
903510.vfu_A00424+
903510.vfu_A01955+
903510.vfu_A00552(>)
903510.vfu_B01457+
903510.vfu_B00247(+)(ER)
903510.vfu_B00796+
903510.vfu_A02560+not used
903510.vfu_B00640(>)
903510.vfu_B00332(+)(mitochondrial)
903510.vfu_A01173(+)(>)
903510.vfu_A02806+
903510.vfu_B00934+
903510.vfu_B00906+
903510.vfu_A00706(+)
903510.vfu_A02769(+)
903510.vfu_A01942(+)
903510.vfu_A00567(+)
903510.vfu_A01523(+)
903510.vfu_B00788(+)
903510.vfu_B01274(+)
903510.vfu_B00657(+)
903510.vfu_A02941(+)
903510.vfu_B00257(+)
903510.vfu_A02494(+)
903510.vfu_A02491(+)
903510.vfu_A02490(+)
903510.vfu_B00434(+)
903510.vfu_A02830(+)
903510.vfu_A01575(+)
903510.vfu_A01248(+)
903510.vfu_A02714(+)
903510.vfu_A00147(+)
903510.vfu_A00972(+)
903510.vfu_A02008(+)
903510.vfu_A01627(+)
903510.vfu_A02136(+)
903510.vfu_A00403(+)
903510.vfu_A01975(+)
903510.vfu_A00710(+)
903510.vfu_A02856(+)
903510.vfu_B01265(+)
903510.vfu_A03060(+)
903510.vfu_A01111(+)
903510.vfu_A01022(+)
903510.vfu_A01566(+)
903510.vfu_A01361(+)
903510.vfu_A01367(+)
903510.vfu_B00919(+)
903510.vfu_A01585(+)
903510.vfu_A02574(+)
903510.vfu_A01637(+)
903510.vfu_A02942(+)
903510.vfu_A00166(+)
903510.vfu_A02214(+)
903510.vfu_B01451(+)
903510.vfu_B01325(+)
903510.vfu_B01320(+)
903510.vfu_A01965(+)
903510.vfu_A00211(+)
903510.vfu_A01359(+)
903510.vfu_A02922(+)
903510.vfu_B00695(+)
903510.vfu_B00231(+)
903510.vfu_A00180(+)not used
903510.vfu_B00349(+)
903510.vfu_A02455(+)
903510.vfu_A02739(+)
903510.vfu_A00999(+)
903510.vfu_A02021(+)
903510.vfu_A02023(+)
903510.vfu_A01389(+)
903510.vfu_A00431(+)
903510.vfu_A02112(+)
903510.vfu_A00775(+)
903510.vfu_A00772(+)
903510.vfu_A01825(+)
903510.vfu_B01454(+)
903510.vfu_B00115(+)
903510.vfu_B00759(+)
903510.vfu_B00596(+)
903510.vfu_B00571(+)
903510.vfu_A02843(+)
903510.vfu_B00379(+)
903510.vfu_A01007(+)
903510.vfu_A01004(+)
903510.vfu_A01344(+)
903510.vfu_B00803(+)
903510.vfu_A02057(+)
903510.vfu_B01437(+)
903510.vfu_B00749(+)
903510.vfu_B00569(+)
903510.vfu_B00103(+)
903510.vfu_B00105(+)
903510.vfu_B00848(+)
903510.vfu_A01013(+)
903510.vfu_A01016(+)
903510.vfu_A01489(+)
903510.vfu_A00614(+)
903510.vfu_A01485(+)
903510.vfu_A01280(+)
903510.vfu_A00541(+)
903510.vfu_B00810(+)
903510.vfu_B00811(+)
903510.vfu_B00818(+)
903510.vfu_A02045(+)
903510.vfu_A02041(+)
903510.vfu_A01628(+)
903510.vfu_A01790(+)
903510.vfu_A01464(+)
903510.vfu_A01467(+)
903510.vfu_A00684(+)
903510.vfu_A00681(+)
903510.vfu_A00534(+)
903510.vfu_B01197(+)
903510.vfu_A01806(+)
903510.vfu_A02317(+)
903510.vfu_A00290(+)
903510.vfu_B01125(+)
903510.vfu_B00550(+)
903510.vfu_B00177(+)
903510.vfu_B00179(+)
903510.vfu_A01065(+)
903510.vfu_A02468(+)
903510.vfu_A01499(+)
903510.vfu_A01490(+)
903510.vfu_A01751(+)
903510.vfu_B00297(+)
903510.vfu_A01473(+)
903510.vfu_A01673(+)
903510.vfu_B01332(+)
903510.vfu_A02099(+)
903510.vfu_A02251(+)
903510.vfu_A02255(+)
903510.vfu_A00031(+)
903510.vfu_A00035(+)
903510.vfu_B01169(+)
903510.vfu_A01556(+)
903510.vfu_A02325(+)
903510.vfu_A01622(+)
903510.vfu_B00760(+)
903510.vfu_B01382(+)
903510.vfu_B01385(+)
903510.vfu_A02891(+)
903510.vfu_B00381(+)
903510.vfu_A01073(+)
903510.vfu_A01314(+)
903510.vfu_A00809(+)
903510.vfu_A02799(+)
903510.vfu_A01685(+)
903510.vfu_A02333(+)
903510.vfu_A00240(+)
903510.vfu_A03111(+)
903510.vfu_B01371(+)
903510.vfu_A03113(+)
903510.vfu_B00157(+)
903510.vfu_A02886(+)
903510.vfu_A02171(+)
903510.vfu_A01879(+)
903510.vfu_A02532(+)not used
903510.vfu_B00845(+)
903510.vfu_B00025(+)
903510.vfu_A00905(+)
903510.vfu_A00654(+)
903510.vfu_A00492(+)
903510.vfu_A00494(+)
903510.vfu_B00706(+)
903510.vfu_B01030(+)
903510.vfu_B00140(+)
903510.vfu_A01056(+)
903510.vfu_B00452(+)
903510.vfu_B00033(+)
903510.vfu_A01608(+)
903510.vfu_A02506(+)
903510.vfu_B01010(+)
903510.vfu_A00137(+)
903510.vfu_A00318(+)
903510.vfu_A02358(+)
903510.vfu_A02359(+)
903510.vfu_A00463(+)
903510.vfu_B01154(+)
903510.vfu_B00735(+)
903510.vfu_B01020(+)
903510.vfu_B01022(+)
903510.vfu_B00123(+)
903510.vfu_B00468(+)
903510.vfu_B00041(+)
903510.vfu_B00992(+)
903510.vfu_B00793(+)
903510.vfu_A02513(+)
903510.vfu_A02514(+)
903510.vfu_A03125(+)
903510.vfu_A00920(+)
903510.vfu_A02290(+)
903510.vfu_A02166(+)
903510.vfu_A00455(+)
903510.vfu_A01981(+)
903510.vfu_A00580(+)
903510.vfu_A03014(+)
903510.vfu_A02982(+)
903510.vfu_A00691(+)
903510.vfu_B00186+
903510.vfu_B00478(+)
903510.vfu_B00057(+)
903510.vfu_B00059(+)
903510.vfu_B00986(+)
903510.vfu_B00876(+)
903510.vfu_B00870(+)
903510.vfu_A00844(+)
903510.vfu_A00935(+)
903510.vfu_A02285(+)not used
903510.vfu_A02289(+)
903510.vfu_A00061(+)
903510.vfu_A02173(+)
903510.vfu_B01187(+)
903510.vfu_A02379(+)
903510.vfu_A00448(+)
903510.vfu_A00110(+)
903510.vfu_A01175(+)
903510.vfu_B00968(+)
903510.vfu_A01882(+)
903510.vfu_B01135(+)
903510.vfu_B00661(+)
903510.vfu_B00404(+)
903510.vfu_A00599(+)
903510.vfu_B00401(+)
903510.vfu_A00606(+)
903510.vfu_B00081(+)
903510.vfu_B00080(+)
903510.vfu_A01429(+)
903510.vfu_A02576(+)
903510.vfu_A01521(+)
903510.vfu_A01528(+)
903510.vfu_A02153(+)
903510.vfu_B00266(+)
903510.vfu_A01802(+)
903510.vfu_B01340(+)
903510.vfu_A01701(+)
903510.vfu_A00054(+)
903510.vfu_A02146(+)
903510.vfu_A00616(+)
903510.vfu_A00619(+)
903510.vfu_A01979(+)
903510.vfu_A02384(+)
903510.vfu_A00126(+)
903510.vfu_A00120(+)
903510.vfu_B01212(+)
903510.vfu_A02546(+)
903510.vfu_B00275(+)
903510.vfu_A00581(+)
903510.vfu_B00678(+)
903510.vfu_A02966(+)
903510.vfu_A01092(+)
903510.vfu_B00415(+)
903510.vfu_B00408(+)not used
903510.vfu_A02524(+)
903510.vfu_B00894(+)
903510.vfu_A02601(+)
903510.vfu_A02571(+)
903510.vfu_A01770(+)
903510.vfu_A00046(+)
903510.vfu_A00429(+)
903510.vfu_B01449(+)
903510.vfu_B01118(+)
903510.vfu_B00241(+)
903510.vfu_B01200(+)
903510.vfu_A03042(+)
903510.vfu_B00646(+)
903510.vfu_A00262(+)
903510.vfu_A01941(+)
903510.vfu_B00424(+)
903510.vfu_B00738(+)
903510.vfu_B00887(+)
903510.vfu_A02704(+)
903510.vfu_A02700(+)
903510.vfu_A02708(+)
903510.vfu_A00964(+)not used
903510.vfu_A00410(+)
903510.vfu_A01767(+)
903510.vfu_A02019(+)
903510.vfu_A01958(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.8 (8/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.75 (14/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================