Effective results for Vibrio furnissii NCTC 11218 (eggnog40)
Summary
Number of putative secreted proteins: 633
- Predicted by EffectiveT3: 202 (high confidence), 319 (low confidence)
- Predicted by EffectiveCCBD: 24 within, 20 before, 54 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 38 proteins (0 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
903510.vfu_A00396 | + | + | (plastid) | ||
903510.vfu_A00709 | + | mitochondrial | |||
903510.vfu_A00700 | + | (mitochondrial); (plastid) | |||
903510.vfu_B00431 | + | (ER); ER | |||
903510.vfu_A02837 | + | mitochondrial; plastid | |||
903510.vfu_A01573 | (>) | ER | |||
903510.vfu_A00155 | + | (mitochondrial) | |||
903510.vfu_B01317 | (>) | ER | |||
903510.vfu_B01080 | + | (mitochondrial); (plastid) | |||
903510.vfu_A01116 | + | (mitochondrial); plastid | |||
903510.vfu_B01302 | + | ER | |||
903510.vfu_A00987 | + | ER | |||
903510.vfu_A00212 | (>) | ER | |||
903510.vfu_A02859 | (>) | (ER) | |||
903510.vfu_B00323 | (>) | mitochondrial | |||
903510.vfu_A00172 | + | ER; (ER) | |||
903510.vfu_B01334 | (PF00194) | ER | |||
903510.vfu_B00597 | (PF00194) | ER | |||
903510.vfu_A01132 | + | (PF00669) | (plastid) | ||
903510.vfu_A01134 | + | (PF00669) | plastid | ||
903510.vfu_A00699 | (>) | ER | |||
903510.vfu_A00343 | (>) | (ER) | |||
903510.vfu_A02476 | + | ER | |||
903510.vfu_A02264 | + | + | (plastid) | ||
903510.vfu_A01936 | (PF08180) | ER | |||
903510.vfu_A02861 | + | ER | |||
903510.vfu_B00823 | (>) | ER | |||
903510.vfu_A02807 | + | ER | |||
903510.vfu_A00327 | (PF01228) | mitochondrial; (mitochondrial) | |||
903510.vfu_A02098 | + | (mitochondrial) | |||
903510.vfu_A01924 | + | (ER) | |||
903510.vfu_A02664 | (<) | (ER) | |||
903510.vfu_A02244 | + | (PF00669) | (plastid) | ||
903510.vfu_A02240 | + | (PF00669) | (plastid) | ||
903510.vfu_A02242 | + | (PF00669) | (plastid) | ||
903510.vfu_B01170 | (>) | ER | |||
903510.vfu_B00446 | (PF05548) | ER | |||
903510.vfu_A03063 | (>) | (mitochondrial) | |||
903510.vfu_A02653 | + | ER | |||
903510.vfu_B01038 | (>) | ER | |||
903510.vfu_A02437 | + | ER | |||
903510.vfu_A02925 | (<) | mitochondrial; (mitochondrial) | |||
903510.vfu_A01516 | + | ER | |||
903510.vfu_A00462 | + | (ER) | |||
903510.vfu_B01156 | + | (mitochondrial); (plastid) | |||
903510.vfu_B01027 | (PF02010) | ER | |||
903510.vfu_B01338 | (>) | ER | |||
903510.vfu_A02742 | + | (mitochondrial) | |||
903510.vfu_A02296 | + | ER | |||
903510.vfu_A02366 | (>) | ER | |||
903510.vfu_A01856 | + | ER | |||
903510.vfu_B00724 | (PF00031) | ER | |||
903510.vfu_A01180 | + | (PF00669) | plastid | ||
903510.vfu_A01220 | + | ER | |||
903510.vfu_A00065 | (>) | mitochondrial | |||
903510.vfu_B01224 | (>) | ER | |||
903510.vfu_A01157 | (>) | (mitochondrial) | |||
903510.vfu_A01158 | + | ER | |||
903510.vfu_A00237 | (>) | ER | |||
903510.vfu_B01046 | (>) | ER | |||
903510.vfu_B01107 | + | ER; (ER) | |||
903510.vfu_A03030 | (>) | ER | |||
903510.vfu_A02964 | (>) | ER | |||
903510.vfu_B01071 | (>) | (mitochondrial) | |||
903510.vfu_A01392 | + | (PF00669) | plastid | ||
903510.vfu_A00131 | + | ER | |||
903510.vfu_A01178 | + | (PF00669) | plastid | ||
903510.vfu_A00384 | (+) | ER | |||
903510.vfu_A02234 | + | (mitochondrial) | |||
903510.vfu_B01276 | + | (plastid) | |||
903510.vfu_A02238 | + | + | |||
903510.vfu_A03067 | + | (plastid) | |||
903510.vfu_B01306 | (+) | mitochondrial; (mitochondrial) | |||
903510.vfu_B01410 | (+) | ER | |||
903510.vfu_B01327 | + | (<) | |||
903510.vfu_A01358 | + | + | |||
903510.vfu_A02142 | + | (plastid) | |||
903510.vfu_A02113 | (+) | (PF08732) | (ER) | ||
903510.vfu_A00371 | + | (plastid) | |||
903510.vfu_B01404 | (+) | ER; (ER) | |||
903510.vfu_A01425 | (+) | (mitochondrial); plastid | |||
903510.vfu_A02937 | (+) | (ER) | |||
903510.vfu_A02442 | (PF02696) | (plastid) | |||
903510.vfu_A01654 | (+) | ER | |||
903510.vfu_A00527 | + | (plastid) | |||
903510.vfu_A01124 | + | (plastid) | |||
903510.vfu_B01198 | (+) | ER | |||
903510.vfu_B01510 | + | (plastid) | |||
903510.vfu_B00552 | (+) | (ER) | |||
903510.vfu_B00119 | (+) | mitochondrial | |||
903510.vfu_A01475 | (+) | (ER) | |||
903510.vfu_A00322 | (+) | ER | |||
903510.vfu_A02095 | (+) | (mitochondrial); (plastid) | |||
903510.vfu_A02094 | + | (mitochondrial) | |||
903510.vfu_A00656 | (+) | (mitochondrial) | |||
903510.vfu_A01817 | + | (plastid) | |||
903510.vfu_A02777 | + | + | |||
903510.vfu_A00804 | (+) | ER | |||
903510.vfu_A02798 | (+) | ER | |||
903510.vfu_A02331 | (+) | (mitochondrial); (plastid) | |||
903510.vfu_B00712 | + | (ER) | |||
903510.vfu_A02676 | + | (ER) | |||
903510.vfu_A01479 | (+) | (ER); (mitochondrial) | |||
903510.vfu_A01456 | + | ER; not used | |||
903510.vfu_A01872 | (+) | ER | |||
903510.vfu_A00863 | (+) | (ER) | |||
903510.vfu_B00462 | (+) | (mitochondrial) | |||
903510.vfu_A00922 | (+) | (ER) | |||
903510.vfu_A01181 | (+) | (PF00669) | plastid | ||
903510.vfu_A01388 | + | (plastid) | |||
903510.vfu_A01881 | + | (mitochondrial) | |||
903510.vfu_B00086 | (+) | ER | |||
903510.vfu_B00210 | + | (mitochondrial) | |||
903510.vfu_A00646 | + | (plastid) | |||
903510.vfu_A01897 | (+) | ER; (ER) | |||
903510.vfu_B00276 | + | (plastid) | |||
903510.vfu_A00533 | (+) | (mitochondrial); plastid | |||
903510.vfu_A02522 | + | (mitochondrial); not used | |||
903510.vfu_A01391 | + | (>) | |||
903510.vfu_A02155 | (+) | mitochondrial | |||
903510.vfu_A00608 | (+) | (ER) | |||
903510.vfu_B01256 | (+) | (mitochondrial); plastid | |||
903510.vfu_A01868 | (+) | ER | |||
903510.vfu_A02010 | + | (>) | |||
903510.vfu_A00705 | + | ||||
903510.vfu_A00144 | + | ||||
903510.vfu_A00149 | + | ||||
903510.vfu_B00960 | (<) | ||||
903510.vfu_B00781 | + | ||||
903510.vfu_B01272 | + | ||||
903510.vfu_A03051 | + | ||||
903510.vfu_B00651 | + | ||||
903510.vfu_A02492 | + | ||||
903510.vfu_A02834 | + | ||||
903510.vfu_A01378 | + | ||||
903510.vfu_A02711 | (>) | ||||
903510.vfu_A01243 | (+) | (<) | |||
903510.vfu_A00975 | (+) | (ER) | |||
903510.vfu_A00419 | (+) | (ER); not used | |||
903510.vfu_A02009 | + | ||||
903510.vfu_A02236 | + | ||||
903510.vfu_A00399 | + | ||||
903510.vfu_B01310 | (PF06961) | ||||
903510.vfu_B01311 | (PF12464) | ||||
903510.vfu_B00187 | (>) | ||||
903510.vfu_B00228 | (>) | ||||
903510.vfu_B00357 | + | ||||
903510.vfu_A02762 | + | ||||
903510.vfu_A01118 | (>) | ||||
903510.vfu_A02826 | + | ||||
903510.vfu_A01564 | (<) | ||||
903510.vfu_A01360 | (+) | (plastid) | |||
903510.vfu_A01366 | (PF00669) | ||||
903510.vfu_A02721 | + | ||||
903510.vfu_A02720 | + | ||||
903510.vfu_A01212 | + | ||||
903510.vfu_A00983 | + | ||||
903510.vfu_A01589 | + | ||||
903510.vfu_A00099 | (<) | ||||
903510.vfu_A01630 | + | not used | |||
903510.vfu_A01636 | + | ||||
903510.vfu_A02103 | + | ||||
903510.vfu_A00768 | + | ||||
903510.vfu_B01418 | + | ||||
903510.vfu_A03073 | (+) | (>) | |||
903510.vfu_B00693 | + | ||||
903510.vfu_B00624 | + | ||||
903510.vfu_B00341 | (+) | (plastid) | |||
903510.vfu_A02584 | (+) | (PF01228) | |||
903510.vfu_A02851 | + | ||||
903510.vfu_A01031 | (>) | ||||
903510.vfu_A02737 | + | not used | |||
903510.vfu_A00433 | + | ||||
903510.vfu_A00774 | + | ||||
903510.vfu_A03088 | + | ||||
903510.vfu_A00208 | + | ||||
903510.vfu_B00113 | (PF06961) | ||||
903510.vfu_A00193 | (>) | ||||
903510.vfu_A01131 | (PF00669) | ||||
903510.vfu_A01130 | + | ||||
903510.vfu_A01139 | (+) | (mitochondrial) | |||
903510.vfu_B00572 | + | ||||
903510.vfu_A01439 | + | not used | |||
903510.vfu_B00371 | + | ||||
903510.vfu_A02441 | (PF02696) | ||||
903510.vfu_A00834 | (>) | ||||
903510.vfu_A00837 | + | ||||
903510.vfu_A00349 | + | ||||
903510.vfu_A01458 | + | ||||
903510.vfu_B01431 | + | ||||
903510.vfu_A00522 | (>) | ||||
903510.vfu_A01836 | (+) | (mitochondrial) | |||
903510.vfu_B01507 | (>) | ||||
903510.vfu_B01502 | + | ||||
903510.vfu_B00747 | + | ||||
903510.vfu_B00745 | (PF02696) | ||||
903510.vfu_A01126 | + | ||||
903510.vfu_A01122 | (+) | plastid | |||
903510.vfu_B00565 | + | ||||
903510.vfu_A02872 | (>) | ||||
903510.vfu_B00360 | + | ||||
903510.vfu_A02477 | + | ||||
903510.vfu_A02132 | + | ||||
903510.vfu_A02209 | + | ||||
903510.vfu_A01482 | + | ||||
903510.vfu_A00820 | + | ||||
903510.vfu_A00825 | + | ||||
903510.vfu_A02265 | + | ||||
903510.vfu_A02262 | + | ||||
903510.vfu_A00227 | + | ||||
903510.vfu_A00291 | + | ||||
903510.vfu_B01354 | (PF06961) | ||||
903510.vfu_A03135 | + | ||||
903510.vfu_B00258 | + | ||||
903510.vfu_A00297 | + | ||||
903510.vfu_A00584 | (>) | ||||
903510.vfu_B01538 | + | ||||
903510.vfu_B00175 | + | ||||
903510.vfu_B00489 | + | ||||
903510.vfu_A01326 | (>) | ||||
903510.vfu_A02863 | + | ||||
903510.vfu_B00395 | (PF05929) | ||||
903510.vfu_A01258 | (+) | (mitochondrial) | |||
903510.vfu_A01257 | (<) | ||||
903510.vfu_A01183 | (<) | ||||
903510.vfu_A02780 | + | ||||
903510.vfu_A02254 | (PF00669) | ||||
903510.vfu_A00785 | + | ||||
903510.vfu_A00784 | + | ||||
903510.vfu_A02327 | + | ||||
903510.vfu_A01863 | + | ||||
903510.vfu_A01812 | (+) | (plastid) | |||
903510.vfu_A01816 | + | ||||
903510.vfu_B01361 | + | ||||
903510.vfu_B01364 | + | ||||
903510.vfu_B00766 | + | ||||
903510.vfu_B01380 | + | ||||
903510.vfu_B01383 | + | ||||
903510.vfu_B00549 | + | ||||
903510.vfu_A02894 | (PF01228) | ||||
903510.vfu_B00382 | + | ||||
903510.vfu_A02418 | + | ||||
903510.vfu_B01112 | + | ||||
903510.vfu_A02064 | + | ||||
903510.vfu_A02065 | + | ||||
903510.vfu_A01973 | (>) | ||||
903510.vfu_A02669 | + | ||||
903510.vfu_A02342 | + | ||||
903510.vfu_A02083 | + | ||||
903510.vfu_A02086 | (+) | (PF12464) | |||
903510.vfu_A02221 | + | ||||
903510.vfu_A02248 | + | ||||
903510.vfu_A01861 | (>) | ||||
903510.vfu_B01375 | + | ||||
903510.vfu_B00719 | + | ||||
903510.vfu_B01398 | + | ||||
903510.vfu_B00021 | (PF12464) | ||||
903510.vfu_B00156 | (PF02182) | ||||
903510.vfu_B00155 | + | ||||
903510.vfu_A02880 | (<) | ||||
903510.vfu_A01782 | + | ||||
903510.vfu_B01101 | + | ||||
903510.vfu_A02302 | (>) | ||||
903510.vfu_A02207 | (<) | ||||
903510.vfu_A01227 | + | ||||
903510.vfu_A01999 | (<) | ||||
903510.vfu_A01559 | + | ||||
903510.vfu_A00013 | + | ||||
903510.vfu_A00010 | + | ||||
903510.vfu_A00474 | + | ||||
903510.vfu_B01033 | + | ||||
903510.vfu_B00149 | (>) | ||||
903510.vfu_B00154 | (+) | (plastid) | |||
903510.vfu_A00862 | + | ||||
903510.vfu_A00030 | + | ||||
903510.vfu_A01424 | + | ||||
903510.vfu_A00649 | + | ||||
903510.vfu_A00313 | + | ||||
903510.vfu_A01357 | (+) | plastid | |||
903510.vfu_B00240 | + | not used | |||
903510.vfu_A01195 | + | ||||
903510.vfu_A01193 | (>) | ||||
903510.vfu_A03001 | + | ||||
903510.vfu_B00863 | (>) | ||||
903510.vfu_A01218 | (>) | ||||
903510.vfu_A02519 | + | ||||
903510.vfu_A02511 | + | ||||
903510.vfu_A02517 | (PF05929) | ||||
903510.vfu_B01369 | + | ||||
903510.vfu_A01501 | (+) | (ER) | |||
903510.vfu_A01435 | + | ||||
903510.vfu_A02957 | + | ||||
903510.vfu_A01728 | (+) | plastid | |||
903510.vfu_A02294 | (PF12464) | ||||
903510.vfu_A00072 | + | ||||
903510.vfu_B00188 | + | ||||
903510.vfu_A00078 | + | ||||
903510.vfu_A02168 | + | ||||
903510.vfu_A02361 | + | ||||
903510.vfu_A00453 | (PF05706) | ||||
903510.vfu_B01232 | (>) | ||||
903510.vfu_A01853 | + | ||||
903510.vfu_B01051 | + | ||||
903510.vfu_A03017 | + | ||||
903510.vfu_B00544 | + | ||||
903510.vfu_B00618 | + | ||||
903510.vfu_B00184 | + | ||||
903510.vfu_A01364 | + | ||||
903510.vfu_A02458 | + | ||||
903510.vfu_A02626 | + | ||||
903510.vfu_A02272 | + | ||||
903510.vfu_B00136 | (>) | ||||
903510.vfu_A02196 | + | ||||
903510.vfu_A00939 | (<) | ||||
903510.vfu_A00444 | (+) | (plastid) | |||
903510.vfu_A00064 | + | ||||
903510.vfu_A00292 | (<) | ||||
903510.vfu_A02375 | + | ||||
903510.vfu_A00520 | + | ||||
903510.vfu_A02372 | (PF01228) | ||||
903510.vfu_A02373 | (PF01228) | not used | |||
903510.vfu_A00119 | (<) | ||||
903510.vfu_B01223 | + | ||||
903510.vfu_A01888 | + | ||||
903510.vfu_B00261 | + | ||||
903510.vfu_B00265 | (>) | ||||
903510.vfu_A03023 | (>) | ||||
903510.vfu_A03028 | + | ||||
903510.vfu_B00407 | + | ||||
903510.vfu_A02578 | (<) | ||||
903510.vfu_B00922 | + | ||||
903510.vfu_A02034 | (>) | ||||
903510.vfu_A01415 | + | ||||
903510.vfu_B01347 | + | ||||
903510.vfu_A00643 | (<) | ||||
903510.vfu_A02145 | + | ||||
903510.vfu_A00124 | (<) | ||||
903510.vfu_B01108 | + | ||||
903510.vfu_A03143 | + | ||||
903510.vfu_B00672 | (<) | ||||
903510.vfu_A02969 | + | ||||
903510.vfu_B01076 | + | ||||
903510.vfu_B00072 | + | ||||
903510.vfu_B00097 | + | ||||
903510.vfu_A01384 | + | ||||
903510.vfu_A02600 | + | ||||
903510.vfu_A02768 | (<) | ||||
903510.vfu_A02770 | + | ||||
903510.vfu_A01830 | (>) | ||||
903510.vfu_A00760 | (>) | ||||
903510.vfu_A01778 | + | ||||
903510.vfu_A00732 | + | ||||
903510.vfu_A02154 | + | ||||
903510.vfu_A00424 | + | ||||
903510.vfu_A01955 | + | ||||
903510.vfu_A00552 | (>) | ||||
903510.vfu_B01457 | + | ||||
903510.vfu_B00247 | (+) | (ER) | |||
903510.vfu_B00796 | + | ||||
903510.vfu_A02560 | + | not used | |||
903510.vfu_B00640 | (>) | ||||
903510.vfu_B00332 | (+) | (mitochondrial) | |||
903510.vfu_A01173 | (+) | (>) | |||
903510.vfu_A02806 | + | ||||
903510.vfu_B00934 | + | ||||
903510.vfu_B00906 | + | ||||
903510.vfu_A00706 | (+) | ||||
903510.vfu_A02769 | (+) | ||||
903510.vfu_A01942 | (+) | ||||
903510.vfu_A00567 | (+) | ||||
903510.vfu_A01523 | (+) | ||||
903510.vfu_B00788 | (+) | ||||
903510.vfu_B01274 | (+) | ||||
903510.vfu_B00657 | (+) | ||||
903510.vfu_A02941 | (+) | ||||
903510.vfu_B00257 | (+) | ||||
903510.vfu_A02494 | (+) | ||||
903510.vfu_A02491 | (+) | ||||
903510.vfu_A02490 | (+) | ||||
903510.vfu_B00434 | (+) | ||||
903510.vfu_A02830 | (+) | ||||
903510.vfu_A01575 | (+) | ||||
903510.vfu_A01248 | (+) | ||||
903510.vfu_A02714 | (+) | ||||
903510.vfu_A00147 | (+) | ||||
903510.vfu_A00972 | (+) | ||||
903510.vfu_A02008 | (+) | ||||
903510.vfu_A01627 | (+) | ||||
903510.vfu_A02136 | (+) | ||||
903510.vfu_A00403 | (+) | ||||
903510.vfu_A01975 | (+) | ||||
903510.vfu_A00710 | (+) | ||||
903510.vfu_A02856 | (+) | ||||
903510.vfu_B01265 | (+) | ||||
903510.vfu_A03060 | (+) | ||||
903510.vfu_A01111 | (+) | ||||
903510.vfu_A01022 | (+) | ||||
903510.vfu_A01566 | (+) | ||||
903510.vfu_A01361 | (+) | ||||
903510.vfu_A01367 | (+) | ||||
903510.vfu_B00919 | (+) | ||||
903510.vfu_A01585 | (+) | ||||
903510.vfu_A02574 | (+) | ||||
903510.vfu_A01637 | (+) | ||||
903510.vfu_A02942 | (+) | ||||
903510.vfu_A00166 | (+) | ||||
903510.vfu_A02214 | (+) | ||||
903510.vfu_B01451 | (+) | ||||
903510.vfu_B01325 | (+) | ||||
903510.vfu_B01320 | (+) | ||||
903510.vfu_A01965 | (+) | ||||
903510.vfu_A00211 | (+) | ||||
903510.vfu_A01359 | (+) | ||||
903510.vfu_A02922 | (+) | ||||
903510.vfu_B00695 | (+) | ||||
903510.vfu_B00231 | (+) | ||||
903510.vfu_A00180 | (+) | not used | |||
903510.vfu_B00349 | (+) | ||||
903510.vfu_A02455 | (+) | ||||
903510.vfu_A02739 | (+) | ||||
903510.vfu_A00999 | (+) | ||||
903510.vfu_A02021 | (+) | ||||
903510.vfu_A02023 | (+) | ||||
903510.vfu_A01389 | (+) | ||||
903510.vfu_A00431 | (+) | ||||
903510.vfu_A02112 | (+) | ||||
903510.vfu_A00775 | (+) | ||||
903510.vfu_A00772 | (+) | ||||
903510.vfu_A01825 | (+) | ||||
903510.vfu_B01454 | (+) | ||||
903510.vfu_B00115 | (+) | ||||
903510.vfu_B00759 | (+) | ||||
903510.vfu_B00596 | (+) | ||||
903510.vfu_B00571 | (+) | ||||
903510.vfu_A02843 | (+) | ||||
903510.vfu_B00379 | (+) | ||||
903510.vfu_A01007 | (+) | ||||
903510.vfu_A01004 | (+) | ||||
903510.vfu_A01344 | (+) | ||||
903510.vfu_B00803 | (+) | ||||
903510.vfu_A02057 | (+) | ||||
903510.vfu_B01437 | (+) | ||||
903510.vfu_B00749 | (+) | ||||
903510.vfu_B00569 | (+) | ||||
903510.vfu_B00103 | (+) | ||||
903510.vfu_B00105 | (+) | ||||
903510.vfu_B00848 | (+) | ||||
903510.vfu_A01013 | (+) | ||||
903510.vfu_A01016 | (+) | ||||
903510.vfu_A01489 | (+) | ||||
903510.vfu_A00614 | (+) | ||||
903510.vfu_A01485 | (+) | ||||
903510.vfu_A01280 | (+) | ||||
903510.vfu_A00541 | (+) | ||||
903510.vfu_B00810 | (+) | ||||
903510.vfu_B00811 | (+) | ||||
903510.vfu_B00818 | (+) | ||||
903510.vfu_A02045 | (+) | ||||
903510.vfu_A02041 | (+) | ||||
903510.vfu_A01628 | (+) | ||||
903510.vfu_A01790 | (+) | ||||
903510.vfu_A01464 | (+) | ||||
903510.vfu_A01467 | (+) | ||||
903510.vfu_A00684 | (+) | ||||
903510.vfu_A00681 | (+) | ||||
903510.vfu_A00534 | (+) | ||||
903510.vfu_B01197 | (+) | ||||
903510.vfu_A01806 | (+) | ||||
903510.vfu_A02317 | (+) | ||||
903510.vfu_A00290 | (+) | ||||
903510.vfu_B01125 | (+) | ||||
903510.vfu_B00550 | (+) | ||||
903510.vfu_B00177 | (+) | ||||
903510.vfu_B00179 | (+) | ||||
903510.vfu_A01065 | (+) | ||||
903510.vfu_A02468 | (+) | ||||
903510.vfu_A01499 | (+) | ||||
903510.vfu_A01490 | (+) | ||||
903510.vfu_A01751 | (+) | ||||
903510.vfu_B00297 | (+) | ||||
903510.vfu_A01473 | (+) | ||||
903510.vfu_A01673 | (+) | ||||
903510.vfu_B01332 | (+) | ||||
903510.vfu_A02099 | (+) | ||||
903510.vfu_A02251 | (+) | ||||
903510.vfu_A02255 | (+) | ||||
903510.vfu_A00031 | (+) | ||||
903510.vfu_A00035 | (+) | ||||
903510.vfu_B01169 | (+) | ||||
903510.vfu_A01556 | (+) | ||||
903510.vfu_A02325 | (+) | ||||
903510.vfu_A01622 | (+) | ||||
903510.vfu_B00760 | (+) | ||||
903510.vfu_B01382 | (+) | ||||
903510.vfu_B01385 | (+) | ||||
903510.vfu_A02891 | (+) | ||||
903510.vfu_B00381 | (+) | ||||
903510.vfu_A01073 | (+) | ||||
903510.vfu_A01314 | (+) | ||||
903510.vfu_A00809 | (+) | ||||
903510.vfu_A02799 | (+) | ||||
903510.vfu_A01685 | (+) | ||||
903510.vfu_A02333 | (+) | ||||
903510.vfu_A00240 | (+) | ||||
903510.vfu_A03111 | (+) | ||||
903510.vfu_B01371 | (+) | ||||
903510.vfu_A03113 | (+) | ||||
903510.vfu_B00157 | (+) | ||||
903510.vfu_A02886 | (+) | ||||
903510.vfu_A02171 | (+) | ||||
903510.vfu_A01879 | (+) | ||||
903510.vfu_A02532 | (+) | not used | |||
903510.vfu_B00845 | (+) | ||||
903510.vfu_B00025 | (+) | ||||
903510.vfu_A00905 | (+) | ||||
903510.vfu_A00654 | (+) | ||||
903510.vfu_A00492 | (+) | ||||
903510.vfu_A00494 | (+) | ||||
903510.vfu_B00706 | (+) | ||||
903510.vfu_B01030 | (+) | ||||
903510.vfu_B00140 | (+) | ||||
903510.vfu_A01056 | (+) | ||||
903510.vfu_B00452 | (+) | ||||
903510.vfu_B00033 | (+) | ||||
903510.vfu_A01608 | (+) | ||||
903510.vfu_A02506 | (+) | ||||
903510.vfu_B01010 | (+) | ||||
903510.vfu_A00137 | (+) | ||||
903510.vfu_A00318 | (+) | ||||
903510.vfu_A02358 | (+) | ||||
903510.vfu_A02359 | (+) | ||||
903510.vfu_A00463 | (+) | ||||
903510.vfu_B01154 | (+) | ||||
903510.vfu_B00735 | (+) | ||||
903510.vfu_B01020 | (+) | ||||
903510.vfu_B01022 | (+) | ||||
903510.vfu_B00123 | (+) | ||||
903510.vfu_B00468 | (+) | ||||
903510.vfu_B00041 | (+) | ||||
903510.vfu_B00992 | (+) | ||||
903510.vfu_B00793 | (+) | ||||
903510.vfu_A02513 | (+) | ||||
903510.vfu_A02514 | (+) | ||||
903510.vfu_A03125 | (+) | ||||
903510.vfu_A00920 | (+) | ||||
903510.vfu_A02290 | (+) | ||||
903510.vfu_A02166 | (+) | ||||
903510.vfu_A00455 | (+) | ||||
903510.vfu_A01981 | (+) | ||||
903510.vfu_A00580 | (+) | ||||
903510.vfu_A03014 | (+) | ||||
903510.vfu_A02982 | (+) | ||||
903510.vfu_A00691 | (+) | ||||
903510.vfu_B00186 | + | ||||
903510.vfu_B00478 | (+) | ||||
903510.vfu_B00057 | (+) | ||||
903510.vfu_B00059 | (+) | ||||
903510.vfu_B00986 | (+) | ||||
903510.vfu_B00876 | (+) | ||||
903510.vfu_B00870 | (+) | ||||
903510.vfu_A00844 | (+) | ||||
903510.vfu_A00935 | (+) | ||||
903510.vfu_A02285 | (+) | not used | |||
903510.vfu_A02289 | (+) | ||||
903510.vfu_A00061 | (+) | ||||
903510.vfu_A02173 | (+) | ||||
903510.vfu_B01187 | (+) | ||||
903510.vfu_A02379 | (+) | ||||
903510.vfu_A00448 | (+) | ||||
903510.vfu_A00110 | (+) | ||||
903510.vfu_A01175 | (+) | ||||
903510.vfu_B00968 | (+) | ||||
903510.vfu_A01882 | (+) | ||||
903510.vfu_B01135 | (+) | ||||
903510.vfu_B00661 | (+) | ||||
903510.vfu_B00404 | (+) | ||||
903510.vfu_A00599 | (+) | ||||
903510.vfu_B00401 | (+) | ||||
903510.vfu_A00606 | (+) | ||||
903510.vfu_B00081 | (+) | ||||
903510.vfu_B00080 | (+) | ||||
903510.vfu_A01429 | (+) | ||||
903510.vfu_A02576 | (+) | ||||
903510.vfu_A01521 | (+) | ||||
903510.vfu_A01528 | (+) | ||||
903510.vfu_A02153 | (+) | ||||
903510.vfu_B00266 | (+) | ||||
903510.vfu_A01802 | (+) | ||||
903510.vfu_B01340 | (+) | ||||
903510.vfu_A01701 | (+) | ||||
903510.vfu_A00054 | (+) | ||||
903510.vfu_A02146 | (+) | ||||
903510.vfu_A00616 | (+) | ||||
903510.vfu_A00619 | (+) | ||||
903510.vfu_A01979 | (+) | ||||
903510.vfu_A02384 | (+) | ||||
903510.vfu_A00126 | (+) | ||||
903510.vfu_A00120 | (+) | ||||
903510.vfu_B01212 | (+) | ||||
903510.vfu_A02546 | (+) | ||||
903510.vfu_B00275 | (+) | ||||
903510.vfu_A00581 | (+) | ||||
903510.vfu_B00678 | (+) | ||||
903510.vfu_A02966 | (+) | ||||
903510.vfu_A01092 | (+) | ||||
903510.vfu_B00415 | (+) | ||||
903510.vfu_B00408 | (+) | not used | |||
903510.vfu_A02524 | (+) | ||||
903510.vfu_B00894 | (+) | ||||
903510.vfu_A02601 | (+) | ||||
903510.vfu_A02571 | (+) | ||||
903510.vfu_A01770 | (+) | ||||
903510.vfu_A00046 | (+) | ||||
903510.vfu_A00429 | (+) | ||||
903510.vfu_B01449 | (+) | ||||
903510.vfu_B01118 | (+) | ||||
903510.vfu_B00241 | (+) | ||||
903510.vfu_B01200 | (+) | ||||
903510.vfu_A03042 | (+) | ||||
903510.vfu_B00646 | (+) | ||||
903510.vfu_A00262 | (+) | ||||
903510.vfu_A01941 | (+) | ||||
903510.vfu_B00424 | (+) | ||||
903510.vfu_B00738 | (+) | ||||
903510.vfu_B00887 | (+) | ||||
903510.vfu_A02704 | (+) | ||||
903510.vfu_A02700 | (+) | ||||
903510.vfu_A02708 | (+) | ||||
903510.vfu_A00964 | (+) | not used | |||
903510.vfu_A00410 | (+) | ||||
903510.vfu_A01767 | (+) | ||||
903510.vfu_A02019 | (+) | ||||
903510.vfu_A01958 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 0.8 (8/10 KEGG proteins)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.75 (14/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.8 (8/10 KEGG proteins)
Estimated copy number = 1.75 (14/8 KEGG proteins)