Effective results for Peptoniphilus harei ACS-146-V-Sch2b (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 23 proteins (1 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
908338.HMPREF9286_0390(PF01813)mitochondrial; (mitochondrial)
908338.HMPREF9286_0520(PF01813)mitochondrial; (mitochondrial)
908338.HMPREF9286_1321(PF11070)ER
908338.HMPREF9286_0015(PF01121)(ER)
908338.HMPREF9286_0556(PF07837) (PF02971)
908338.HMPREF9286_0702(PF16199)
908338.HMPREF9286_0386(PF12646)
908338.HMPREF9286_0393(PF01990)
908338.HMPREF9286_0392(PF16886)
908338.HMPREF9286_0395(PF01991)
908338.HMPREF9286_0394(PF01992)
908338.HMPREF9286_0397(PF01496)
908338.HMPREF9286_0652(PF16199)
908338.HMPREF9286_0016(PF01121)not used
908338.HMPREF9286_1087PF07847
908338.HMPREF9286_0770(PF16199)
908338.HMPREF9286_1203(PF06100)
908338.HMPREF9286_1110(PF00847)
908338.HMPREF9286_0522(PF16886)
908338.HMPREF9286_0526(PF01496)
908338.HMPREF9286_0527(PF01992)
908338.HMPREF9286_0524(PF01990)
908338.HMPREF9286_0987(PF06100)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================