Effective results for Prochlorococcus marinus str. MIT 9215 (eggnog40)

Summary

Number of putative secreted proteins: 100
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 84 eukaryotic-like domains, contained in 100 proteins (8 high, 92 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
93060.P9215_05411(PF16639) (PF01333)(ER)
93060.P9215_05491(PF02507)ER
93060.P9215_03981(PF11196)(ER)
93060.P9215_07361(PF16166)ER
93060.P9215_01291(PF05421)(ER); (plastid)
93060.P9215_12931PF02077ER
93060.P9215_10281(PF11152)ER
93060.P9215_05891(PF13326)mitochondrial
93060.P9215_08901(PF12452)ER
93060.P9215_16571PF02468ER
93060.P9215_06531(PF11460)ER
93060.P9215_18551(PF12046)ER
93060.P9215_19171(PF01737)ER
93060.P9215_07841(PF00504)ER
93060.P9215_02781(PF12600)ER
93060.P9215_12341(PF01789)ER
93060.P9215_05821(PF11016)ER
93060.P9215_15541(PF11317)(ER)
93060.P9215_03421(PF05151)ER; not used
93060.P9215_17411(PF11341)(ER)
93060.P9215_17881(PF00796)ER; not used
93060.P9215_03231(PF00283)(ER); not used
93060.P9215_02741(PF00737)(mitochondrial)
93060.P9215_03221(PF00284) (PF00283)
93060.P9215_02771(PF02532)ER; not used
93060.P9215_02761PF02468ER; not used
93060.P9215_02541(PF04483)(mitochondrial)
93060.P9215_02841(PF11378)
93060.P9215_03521(PF12899)
93060.P9215_09971(PF11360)
93060.P9215_08351(PF11264)
93060.P9215_00761(PF00504)
93060.P9215_17641(PF11998)
93060.P9215_04671(PF08853)
93060.P9215_17151(PF11805)
93060.P9215_07521(PF12049)
93060.P9215_13781(PF08854)
93060.P9215_03401(PF00421)
93060.P9215_18661(PF05996)
93060.P9215_13861(PF13911)
93060.P9215_18781(PF11623)
93060.P9215_10061(PF09353)
93060.P9215_11931(PF02529)not used
93060.P9215_18651(PF05996)
93060.P9215_09591(PF11282)
93060.P9215_00741(PF06596)
93060.P9215_19231(PF04481)
93060.P9215_18321(PF12617)
93060.P9215_15591(PF08855)
93060.P9215_08411(PF05996)
93060.P9215_13841(PF00421)
93060.P9215_13191PF10999
93060.P9215_01631(PF11371)
93060.P9215_17531(PF04983)
93060.P9215_01621(PF10664)
93060.P9215_08381(PF11347)
93060.P9215_18501(PF02531)
93060.P9215_17521(PF04983)
93060.P9215_11801(PF11196)
93060.P9215_05431(PF11267)
93060.P9215_18351PF10999
93060.P9215_15461(PF00504)
93060.P9215_04061(PF03492)
93060.P9215_13231(PF00283)
93060.P9215_07491(PF11833)
93060.P9215_17081(PF04839)
93060.P9215_03391(PF01405)not used
93060.P9215_10811(PF06799)
93060.P9215_03131PF00493
93060.P9215_03641(PF01786)
93060.P9215_09871(PF12159)
93060.P9215_01391(PF11910)
93060.P9215_12421(PF10674)
93060.P9215_03251(PF01788)
93060.P9215_09881(PF10693)
93060.P9215_19491(PF01947)
93060.P9215_07021(PF07082)
93060.P9215_01251(PF12095)
93060.P9215_02501(PF01716)
93060.P9215_09461(PF11947)
93060.P9215_03241PF02419not used
93060.P9215_08851(PF12527)
93060.P9215_17911(PF00223)
93060.P9215_17871(PF02605)
93060.P9215_10481(PF04483)
93060.P9215_13621(PF02392)
93060.P9215_07041(PF01744)
93060.P9215_18311(PF11909)
93060.P9215_02961(PF02533)not used
93060.P9215_07101(PF00421)
93060.P9215_07071(PF09493)
93060.P9215_13351(PF00504)not used
93060.P9215_13641(PF00421)
93060.P9215_10561(PF11210)
93060.P9215_17921(PF00223)
93060.P9215_13131PF10999
93060.P9215_07871(PF09493)
93060.P9215_03551(PF02427)
93060.P9215_15151(PF13355)
93060.P9215_12531(PF06298)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================