Effective results for Desmospora sp. 8437 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 30 proteins (11 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
997346.HMPREF9374_3158(PF09683)mitochondrial; (mitochondrial)
997346.HMPREF9374_0505(PF13176)(ER); ER
997346.HMPREF9374_0625PF03133(mitochondrial)
997346.HMPREF9374_3413PF00688ER
997346.HMPREF9374_1773(PF12862) (PF13176)
997346.HMPREF9374_2046(PF13176)
997346.HMPREF9374_0166(PF13906)
997346.HMPREF9374_1775(PF13176)
997346.HMPREF9374_1846PF06905
997346.HMPREF9374_2071PF06905
997346.HMPREF9374_0403(PF15588)
997346.HMPREF9374_1912(PF13176)
997346.HMPREF9374_3281(PF13176)
997346.HMPREF9374_3512(PF13176)
997346.HMPREF9374_1844(PF06792)
997346.HMPREF9374_1135(PF00847)
997346.HMPREF9374_2758PF04893
997346.HMPREF9374_2757PF04893
997346.HMPREF9374_2294(PF06792)
997346.HMPREF9374_2741PF04893
997346.HMPREF9374_2742PF04893
997346.HMPREF9374_3227PF04893
997346.HMPREF9374_2578(PF13921)
997346.HMPREF9374_1050(PF13921)
997346.HMPREF9374_0631(PF06838)
997346.HMPREF9374_0630(PF06838)not used
997346.HMPREF9374_2843(PF05495)
997346.HMPREF9374_1838(PF13921)
997346.HMPREF9374_2783PF04893
997346.HMPREF9374_1552PF04893

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================