Effective results for Streptococcus infantis X (eggnog40)

Summary

Number of putative secreted proteins: 98
- Predicted by T4SEpre: 89
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 25 proteins (5 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
997830.HMPREF1124_0712+ER
997830.HMPREF1124_0783+ER
997830.HMPREF1124_0015+ER
997830.HMPREF1124_0950+ER
997830.HMPREF1124_1977PF02916ER
997830.HMPREF1124_0566PF04103ER
997830.HMPREF1124_0619+ER
997830.HMPREF1124_1690+ER
997830.HMPREF1124_1697+ER
997830.HMPREF1124_1696+ER
997830.HMPREF1124_0978PF03083ER; (ER)
997830.HMPREF1124_1062+ER
997830.HMPREF1124_0112+ER
997830.HMPREF1124_0914+(ER); ER
997830.HMPREF1124_1521+mitochondrial
997830.HMPREF1124_1090+ER
997830.HMPREF1124_1094+ER
997830.HMPREF1124_1098+ER
997830.HMPREF1124_1252+(ER)
997830.HMPREF1124_1381PF03083ER
997830.HMPREF1124_0933(PF04991)(ER)
997830.HMPREF1124_1846(PF05257)ER
997830.HMPREF1124_0641(PF03644)(mitochondrial)
997830.HMPREF1124_1078+ER
997830.HMPREF1124_0661(PF05257)(ER)
997830.HMPREF1124_1621+mitochondrial
997830.HMPREF1124_0865(PF05257)ER
997830.HMPREF1124_0197+(mitochondrial)
997830.HMPREF1124_1927+ER
997830.HMPREF1124_1925+(mitochondrial); (plastid)
997830.HMPREF1124_0324(PF06414)(mitochondrial)
997830.HMPREF1124_0528+ER
997830.HMPREF1124_0839+ER
997830.HMPREF1124_1190+plastid
997830.HMPREF1124_1435+(PF03714)
997830.HMPREF1124_1854+(ER)
997830.HMPREF1124_1832+(mitochondrial)
997830.HMPREF1124_0999+(mitochondrial)
997830.HMPREF1124_0658(PF03714)(mitochondrial)
997830.HMPREF1124_0300+
997830.HMPREF1124_0306+
997830.HMPREF1124_0235+
997830.HMPREF1124_1786+
997830.HMPREF1124_1992+
997830.HMPREF1124_1991+
997830.HMPREF1124_0557+
997830.HMPREF1124_0485+
997830.HMPREF1124_0480(PF05257)
997830.HMPREF1124_1205(PF01018)not used
997830.HMPREF1124_1684+
997830.HMPREF1124_0804(PF01351)
997830.HMPREF1124_0615(PF05257)
997830.HMPREF1124_0580+
997830.HMPREF1124_0543+
997830.HMPREF1124_1016+
997830.HMPREF1124_0378+
997830.HMPREF1124_0117+
997830.HMPREF1124_1351(PF14311)
997830.HMPREF1124_1735+
997830.HMPREF1124_0325(PF06414)
997830.HMPREF1124_1724PF03083
997830.HMPREF1124_0913+
997830.HMPREF1124_1890+
997830.HMPREF1124_1115+
997830.HMPREF1124_0384+
997830.HMPREF1124_0438+
997830.HMPREF1124_0937(PF04991)
997830.HMPREF1124_0936(PF04991)
997830.HMPREF1124_0736+
997830.HMPREF1124_0424+
997830.HMPREF1124_1268+
997830.HMPREF1124_0250+
997830.HMPREF1124_0406+
997830.HMPREF1124_0401+
997830.HMPREF1124_0066+
997830.HMPREF1124_0069+
997830.HMPREF1124_1444+
997830.HMPREF1124_1206(PF01018)
997830.HMPREF1124_0478+
997830.HMPREF1124_1057+
997830.HMPREF1124_1050+
997830.HMPREF1124_1930+
997830.HMPREF1124_1801+
997830.HMPREF1124_0468(PF05257)
997830.HMPREF1124_0510+
997830.HMPREF1124_0850+
997830.HMPREF1124_1924+
997830.HMPREF1124_1922+
997830.HMPREF1124_1325(PF01351)
997830.HMPREF1124_1326(PF01351)
997830.HMPREF1124_0343+
997830.HMPREF1124_0841+
997830.HMPREF1124_1955+
997830.HMPREF1124_0023+
997830.HMPREF1124_0159+
997830.HMPREF1124_1175+
997830.HMPREF1124_0834+
997830.HMPREF1124_0835+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================