Effective results for Thioalkalivibrio sp. AKL10 (refseq)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 35 proteins (0 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
WP_019568982.1				(PF03625)	ER
WP_018937856.1				(PF02635)	ER
WP_019612534.1				(PF02635)	ER
WP_018176017.1				(PF03625)	ER
WP_019628104.1				(PF03625)	ER
WP_026340954.1				(PF02635)	ER
WP_026340943.1				(PF03190)	ER
WP_019627746.1				(PF02635)	(ER)
WP_019627884.1				(PF02635)	ER
WP_018169632.1				(PF03625)	(mitochondrial)
WP_019562695.1				(PF02635)	ER
WP_018649946.1				(PF03625)	ER
WP_019628628.1				(PF02635)	ER
WP_018144698.1				(PF03625)	ER
WP_019628014.1				(PF02635)	ER
WP_019567723.1				(PF01786)
WP_018144001.1				(PF01597)
WP_018167932.1				(PF02635)
WP_018143893.1				(PF02635)
WP_018146111.1				(PF03625)
WP_018937782.1				(PF02732)
WP_018144178.1				(PF01597)
WP_018168395.1				(PF12899)
WP_019628575.1				(PF02635)
WP_018176402.1				(PF01597)
WP_038038272.1				(PF03190)
WP_018169363.1				(PF11969)
WP_019627383.1				(PF12038)
WP_018145688.1				(PF02635)
WP_026287984.1				(PF02635)
WP_019563543.1				(PF03625)
WP_019628425.1				(PF03190)
WP_018176524.1				(PF02635)
WP_018168416.1				(PF01597)
WP_019628730.1				(PF05706)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================