Effective results for Pseudomonas sp. LAMO17WK12:I4 (refseq)

Summary

Number of putative secreted proteins: 611
- Predicted by EffectiveT3: 194 (high confidence), 271 (low confidence)
- Predicted by EffectiveCCBD: 15 within, 11 before, 33 behind expected region 25..70aa
- Predicted by T4SEpre: 91
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 20 proteins (0 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
WP_019096853.1+ER
WP_019096642.1+(ER)
WP_019099211.1(<)ER
WP_025753015.1+ER
WP_025752712.1+ER
WP_019098457.1+(mitochondrial)
WP_027614739.1+(ER); (plastid)
WP_025752686.1+ER; (ER)
WP_025754189.1(PF06039)ER
WP_019098764.1+ER
WP_025754570.1+ER
WP_019098440.1+(ER)
WP_016711770.1(>)ER
WP_019096676.1+mitochondrial
WP_025754027.1+ER
WP_016711968.1(PF13488)ER
WP_025754641.1(PF07678)ER
WP_019099069.1+ER
WP_019098576.1+ER
WP_025753723.1+(mitochondrial); (plastid)
WP_025754060.1+(ER); (mitochondrial)
WP_019098571.1+ER
WP_019099709.1(>)ER
WP_016712435.1+ER
WP_025753930.1+ER
WP_019096309.1(PF01852)ER
WP_025754268.1+ER
WP_016714320.1+ER
WP_019099532.1(>)ER
WP_019098460.1+ER
WP_016712981.1+ER
WP_025753699.1(PF13488)ER
WP_019096891.1(PF13488)ER
WP_016713393.1+ER
WP_016714764.1+(mitochondrial)
WP_019097068.1+ER; (ER)
WP_025754319.1+ER
WP_019096961.1+ER
WP_016715101.1(>)ER
WP_016714007.1+ER
WP_019099837.1(>)ER
WP_050547883.1+(mitochondrial); (plastid)
WP_016501466.1(PF13488)ER
WP_019099272.1+ER
WP_016714458.1(>)ER
WP_019098485.1(PF06039)ER
WP_025753125.1+ER
WP_025752850.1+ER
WP_016712836.1+ER
WP_012271091.1(<)ER
WP_016712983.1+(ER)
WP_016713141.1(>)(mitochondrial)
WP_003254755.1+ER
WP_025754410.1+ER
WP_019098500.1+ER
WP_025753288.1(PF01852)ER
WP_025754941.1(>)ER
WP_025753975.1+ER
WP_025753853.1+(mitochondrial); plastid
WP_033695389.1(+)(PF13582)ER
WP_016712750.1+ER
WP_019099759.1(>)ER; (ER)
WP_019098496.1+ER
WP_025754050.1(PF06293)(ER)
WP_025754630.1+ER
WP_025754052.1+ER
WP_019097481.1+ER
WP_010954645.1(>)mitochondrial; (ER)
WP_016711925.1+ER; (ER)
WP_025753952.1(<)ER
WP_025755037.1(>)mitochondrial; (mitochondrial)
WP_025754698.1+(mitochondrial); (ER)
WP_025754943.1+ER
WP_019096535.1+ER
WP_016715472.1(>)(ER)
WP_016711914.1+ER
WP_016714784.1+(mitochondrial); (plastid)
WP_016713291.1(PF06039)(ER)
WP_019097559.1(>)(mitochondrial)
WP_025753837.1+plastid
WP_025753234.1++
WP_025754944.1(+)(ER)
WP_025754048.1(+)ER
WP_025754407.1+(plastid)
WP_016713817.1+(plastid)
WP_019099471.1+(mitochondrial)
WP_016714563.1++
WP_019099758.1(+)ER
WP_025754466.1(+)(ER)
WP_025754458.1(+)(mitochondrial)
WP_025752678.1+plastid
WP_019097042.1(+)mitochondrial
WP_019097235.1(+)mitochondrial; (plastid)
WP_025754503.1+plastid
WP_025755064.1(<)(plastid)
WP_019099718.1+plastid
WP_025753769.1(+)(ER)
WP_016715506.1+(plastid)
WP_004575843.1+(plastid)
WP_016714299.1(+)ER
WP_016713789.1(+)ER; (ER)
WP_025754279.1+(mitochondrial)
WP_019098256.1+(plastid)
WP_019096813.1+(ER)
WP_019098105.1+(ER)
WP_019097653.1(+)(mitochondrial); (plastid)
WP_016714822.1(+)ER
WP_016713139.1(>)(mitochondrial)
WP_025753956.1(+)mitochondrial; (mitochondrial)
WP_025753918.1(+)(mitochondrial); (plastid)
WP_025752372.1(+)(ER)
WP_019097414.1(+)mitochondrial
WP_019096846.1(+)(mitochondrial); mitochondrial
WP_020371258.1+(<)
WP_025752781.1(+)(ER); (mitochondrial)
WP_025752561.1++
WP_025753380.1+(mitochondrial)
WP_025753856.1+plastid
WP_019096368.1+(mitochondrial)
WP_016487339.1+(ER)
WP_025753417.1+plastid
WP_016711993.1(+)(ER)
WP_019097667.1(+)mitochondrial
WP_016713152.1(<)+
WP_003256968.1+(plastid)
WP_025753070.1(+)(mitochondrial); plastid
WP_019098301.1(+)(ER)
WP_025754091.1(+)mitochondrial
WP_025753961.1(+)(mitochondrial); (plastid)
WP_025752342.1+(plastid)
WP_025753340.1+(plastid)
WP_016713768.1+(mitochondrial)
WP_016488335.1+(ER)
WP_025755030.1(PF16473)
WP_025754925.1(+)(mitochondrial)
WP_019099166.1+
WP_025752538.1+
WP_019097158.1+
WP_025755060.1+
WP_016715226.1+
WP_019096460.1+
WP_019098777.1(+)(ER)
WP_025754222.1+
WP_016713890.1+
WP_025754571.1+
WP_019098265.1+
WP_003254214.1(+)(mitochondrial)
WP_025754491.1(+)(mitochondrial)
WP_019098106.1+
WP_016714890.1(>)
WP_019098761.1(>)
WP_012273542.1+
WP_003254393.1+
WP_019096627.1+
WP_019096355.1(PF07720)
WP_019096689.1+
WP_019097103.1+
WP_019096343.1+
WP_019096516.1+
WP_016498176.1+
WP_016712222.1+
WP_025754958.1+
WP_019096402.1+
WP_016711148.1(+)(mitochondrial)
WP_019098470.1+
WP_019098833.1+
WP_016715779.1(+)(>)
WP_010952367.1(+)(>)
WP_019096186.1+
WP_025754386.1(+)+
WP_019096756.1+
WP_019097478.1+
WP_013974710.1(+)+
WP_025753211.1+
WP_016713489.1+
WP_025753241.1+
WP_025754360.1(+)+
WP_016714157.1+
WP_025753745.1+
WP_025754885.1(+)(plastid)
WP_025754476.1+
WP_025754231.1(+)+
WP_019096883.1+
WP_019099720.1+
WP_019096344.1+
WP_019096936.1+
WP_016489386.1(>)
WP_012273515.1+
WP_025753051.1+
WP_016712237.1+
WP_016713342.1+
WP_025752615.1+
WP_016714470.1+
WP_027609415.1+
WP_025754776.1(>)
WP_019097913.1+
WP_019097915.1+
WP_025752182.1+
WP_025754796.1+
WP_019098437.1+
WP_050587803.1+
WP_025754697.1+
WP_025752437.1+
WP_019099786.1+
WP_025752165.1+
WP_019097820.1+
WP_019097854.1+
WP_003253504.1+
WP_025754510.1+
WP_019098253.1+
WP_025754676.1+
WP_016713335.1+
WP_019099603.1+
WP_019097691.1+
WP_003253387.1+
WP_016714029.1(+)(plastid)
WP_019096272.1(+)(mitochondrial)
WP_025754950.1+
WP_019096860.1+
WP_025753429.1+
WP_019097491.1+
WP_025754165.1+
WP_010955104.1(>)
WP_025754514.1+
WP_025754668.1+
WP_025754349.1+
WP_016715632.1+
WP_025754814.1+
WP_010952562.1(>)
WP_025754853.1+
WP_019099727.1+
WP_025752939.1+
WP_019099794.1+
WP_016713590.1(PF06293)
WP_025753189.1+
WP_019097861.1+
WP_016392438.1+
WP_025752145.1+
WP_025754953.1(>)
WP_025754702.1+
WP_025754414.1+
WP_016713804.1+
WP_025754472.1+
WP_019099292.1(+)(plastid)
WP_025754969.1+
WP_025754273.1(+)+
WP_016713866.1+
WP_019099444.1+
WP_019096167.1(+)(plastid)
WP_025754238.1+
WP_016711177.1+
WP_025752803.1+
WP_016712689.1+
WP_019097462.1(+)(plastid)
WP_019098912.1(>)
WP_025754428.1(+)(plastid)
WP_019096759.1+
WP_019096567.1+
WP_033695407.1+
WP_025752401.1+
WP_003255454.1+
WP_025754009.1(+)+
WP_009682777.1+
WP_016713270.1(<)
WP_025752750.1+
WP_025752344.1+
WP_016711773.1+
WP_025754443.1+
WP_025754038.1+
WP_025754964.1+
WP_019097850.1+
WP_025754540.1(+)(plastid)
WP_019098656.1+
WP_016712556.1+
WP_016711199.1+
WP_019099131.1+
WP_019098505.1+
WP_019098439.1+
WP_019096647.1(+)(plastid)
WP_019096212.1+
WP_016714545.1(PF06293)
WP_016711981.1+
WP_003255391.1+
WP_050547878.1+
WP_019097123.1(<)
WP_016712122.1+
WP_016712973.1+
WP_019096764.1(PF07653)
WP_025753147.1+
WP_016715525.1(>)
WP_019096469.1+
WP_025753962.1+
WP_016714324.1+
WP_016715205.1+
WP_016715227.1+
WP_025753672.1+
WP_025754471.1(+)(plastid)
WP_025754334.1+
WP_019096232.1(+)(ER)
WP_016711468.1+
WP_019096501.1+
WP_025753110.1+
WP_016715412.1+
WP_019098699.1+
WP_025752210.1+
WP_019098633.1+
WP_019097888.1+
WP_016712620.1+
WP_019098086.1+
WP_019098885.1(<)
WP_050547871.1+
WP_016712182.1+
WP_025752237.1+
WP_019099472.1+
WP_019098928.1+
WP_019098754.1+
WP_025754584.1+
WP_016712962.1(>)
WP_016712341.1(+)(plastid)
WP_025754198.1+
WP_025753786.1+
WP_019098413.1+
WP_016714939.1+
WP_016714311.1(>)
WP_019098088.1+
WP_019099589.1+
WP_019097649.1+
WP_019099531.1+
WP_023128610.1+
WP_019097138.1+
WP_016712457.1(+)(mitochondrial)
WP_025753863.1+
WP_025753841.1+
WP_025754811.1+
WP_025752915.1+
WP_019098396.1+
WP_025753986.1+
WP_019098668.1+
WP_016714544.1(PF06293)
WP_016711767.1(+)(ER)
WP_025754528.1+
WP_013972924.1+
WP_016715096.1+
WP_033695273.1(+)(plastid)
WP_025754806.1(+)plastid
WP_025754074.1+
WP_025754120.1+
WP_025755042.1+
WP_025753337.1+
WP_025754419.1+
WP_019096162.1(>)
WP_016711876.1(>)
WP_025754746.1+
WP_019099088.1(>)
WP_019096267.1+
WP_019097920.1+
WP_016715296.1+
WP_019097922.1+
WP_016711142.1+
WP_019096887.1(>)
WP_025752816.1+
WP_019098547.1(>)
WP_025754427.1+
WP_025754208.1+
WP_016711585.1+
WP_025754815.1(+)(<)
WP_025754789.1+
WP_025752453.1+
WP_016715680.1+
WP_019098681.1+
WP_025754382.1(+)(mitochondrial)
WP_025754051.1(PF06293)
WP_016715684.1+
WP_025753886.1+
WP_025752418.1+
WP_025753746.1+
WP_025753123.1+
WP_004575216.1+
WP_025754013.1+
WP_025754543.1+
WP_025754826.1(+)(ER)
WP_016713275.1+
WP_019099200.1(+)(mitochondrial)
WP_025754683.1+
WP_025754488.1+
WP_019097175.1+
WP_025753896.1+
WP_016712705.1+
WP_025752361.1+
WP_019096486.1+
WP_019099359.1+
WP_025754069.1+
WP_016712422.1+
WP_016715787.1(<)
WP_025752859.1(PF16473)
WP_050547859.1(>)
WP_019099492.1+
WP_025754724.1+
WP_016712659.1(+)
WP_019097027.1(+)
WP_016713426.1(+)
WP_019096839.1(+)
WP_025753143.1(+)
WP_019099533.1(+)
WP_016713836.1(+)
WP_016712467.1(+)
WP_016711135.1(+)
WP_025754627.1(+)
WP_016712029.1(+)
WP_025752601.1(+)
WP_025753232.1(+)
WP_019099761.1(+)
WP_003249375.1(+)
WP_016715487.1(+)
WP_016713158.1(+)
WP_019097372.1(+)
WP_019097997.1(+)
WP_025752240.1(+)
WP_019099693.1(+)
WP_025753733.1(+)
WP_003252287.1(+)
WP_019099314.1(+)
WP_025754417.1(+)
WP_019098523.1(+)
WP_025754817.1(+)
WP_025753694.1(+)
WP_003252148.1(+)
WP_033695325.1(+)
WP_016713912.1(+)
WP_019096401.1(+)
WP_025752528.1(+)
WP_025752428.1(+)
WP_025754829.1(+)
WP_016711342.1(+)
WP_025753450.1(+)
WP_025752737.1(+)
WP_016713891.1(+)
WP_025754389.1(+)
WP_019098193.1(+)
WP_016486361.1(+)
WP_025754245.1(+)
WP_019098442.1(+)
WP_019099209.1(+)
WP_016715071.1(+)
WP_010953293.1(+)
WP_019098153.1(+)
WP_025753160.1(+)
WP_012273535.1(+)
WP_019098850.1(+)
WP_016711143.1(+)
WP_025753166.1(+)
WP_050587800.1(+)
WP_025754774.1(+)
WP_025754049.1(+)
WP_025752839.1(+)
WP_012274251.1(+)
WP_016711545.1(+)
WP_016713391.1(+)
WP_019099146.1(+)
WP_016713864.1(+)
WP_025752720.1(+)
WP_025754557.1(+)
WP_025754290.1(+)
WP_027614779.1(+)
WP_003250422.1(+)
WP_019096711.1(+)
WP_025754546.1(+)
WP_019096315.1(+)
WP_025754084.1(+)
WP_019098358.1(+)
WP_016713325.1(+)
WP_025753877.1(+)
WP_019098729.1(+)
WP_016715379.1(+)
WP_019096631.1(+)
WP_019096526.1(+)
WP_019096834.1(+)
WP_025753427.1(+)
WP_019096403.1(+)
WP_019098511.1(+)
WP_025752848.1(+)
WP_019098114.1(+)
WP_025754599.1(+)
WP_019098501.1(+)
WP_016712527.1(+)
WP_016713837.1(+)
WP_019098831.1(+)
WP_019098658.1(+)
WP_025753926.1(+)
WP_025752326.1(+)
WP_019099867.1(+)
WP_025754498.1(+)
WP_009684718.1(+)
WP_019099803.1(+)
WP_016711107.1(+)
WP_004375483.1(+)
WP_025754898.1(+)
WP_016715339.1(+)
WP_019098700.1(+)
WP_016713177.1(+)
WP_025752590.1(+)
WP_019097046.1(+)
WP_016715077.1(+)
WP_019099282.1(+)
WP_025754141.1(+)
WP_016711413.1(+)
WP_019096893.1(+)
WP_025754154.1(+)
WP_003255452.1(+)
WP_025754892.1(+)
WP_025754834.1(+)
WP_016715611.1(+)
WP_019099097.1(+)
WP_016712172.1(+)
WP_016714744.1(+)
WP_025752348.1(+)
WP_019098310.1(+)
WP_016714319.1(+)
WP_025753992.1(+)
WP_016715704.1(+)
WP_019097169.1(+)
WP_016711728.1(+)
WP_016714596.1(+)
WP_025753214.1(+)
WP_019096198.1(+)
WP_025754504.1(+)
WP_019098624.1(+)
WP_016711905.1+
WP_019096909.1(+)
WP_025752791.1(+)
WP_019099431.1(+)
WP_019099730.1(+)
WP_025754938.1(+)
WP_025754581.1(+)
WP_025754336.1(+)
WP_016714249.1(+)
WP_025754822.1(+)
WP_025754605.1(+)
WP_025752446.1(+)
WP_025752647.1(+)
WP_025754742.1(+)
WP_019098055.1(+)
WP_025754558.1(+)
WP_019097859.1(+)
WP_016484539.1(+)
WP_025754330.1(+)
WP_019098120.1(+)
WP_025752163.1(+)
WP_016713714.1(+)
WP_019096964.1(+)
WP_025753368.1(+)
WP_025752491.1(+)
WP_019096867.1(+)
WP_025754684.1(+)
WP_019096755.1(+)
WP_019096869.1(+)
WP_016715517.1(+)
WP_025752930.1(+)
WP_025755055.1(+)
WP_016712524.1(+)
WP_003255135.1(+)
WP_012051225.1(+)
WP_025753788.1(+)
WP_016711140.1(+)
WP_019097864.1(+)
WP_025754158.1(+)
WP_019097551.1(+)
WP_016712768.1(+)
WP_025754830.1(+)
WP_025753204.1(+)
WP_003254203.1(+)
WP_019099205.1(+)
WP_025752734.1(+)
WP_025752652.1(+)
WP_025754637.1(+)
WP_019096504.1(+)
WP_016711158.1(+)
WP_019096349.1(+)
WP_016713349.1(+)
WP_019099109.1(+)
WP_019096470.1(+)
WP_012271110.1(+)
WP_025754377.1(+)
WP_025754628.1(+)
WP_016715155.1(+)
WP_003250537.1(+)
WP_025753933.1(+)
WP_019096564.1(+)
WP_019098132.1(+)
WP_050591172.1(+)
WP_025754536.1(+)
WP_019097582.1(+)
WP_019098473.1(+)
WP_019097584.1(+)
WP_009684590.1(+)
WP_025755076.1(+)
WP_025754232.1(+)
WP_025752571.1(+)
WP_025753083.1(+)
WP_025754067.1(+)
WP_019096283.1(+)
WP_016715068.1(+)
WP_025754650.1(+)
WP_025754316.1(+)
WP_016712231.1(+)
WP_019099426.1(+)
WP_019098157.1(+)
WP_025754890.1(+)
WP_025754653.1(+)
WP_019096831.1(+)
WP_016713411.1(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.3 (13/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.375 (11/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================