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Genomes encoding eukaryotic-like proteins

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PF01165 Ribosomal protein S21

Copy number in non-pathogens:
Mean=0.89 Stddev=0.62

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Burkholderia ambifaria IOP40-10 s 5 4
Rhizobium leguminosarum bv. trifolii WSM1325 s 5 4
Rhizobium sp. CF080 s 5 4
Bradyrhizobium elkanii USDA 76 s 5 4
Rhizobium leguminosarum bv. phaseoli 4292 s 5 4
Rhizobium leguminosarum bv. trifolii SRDI943 s 5 4
Rhizobium leguminosarum bv. viciae WSM1455 s 5 4
Rhizobium leguminosarum bv. viciae Vc2 s 5 4
Rhizobium leguminosarum bv. viciae UPM1137 s 5 4
Paraburkholderia kururiensis M130 s 5 4
Burkholderia oklahomensis C6786 s 5 4
Burkholderia thailandensis TXDOH s 5 4
Burkholderia oklahomensis EO147 s 5 4
Burkholderia sp. UYPR1.413 s 6 5
Rhizobium leguminosarum bv. trifolii CC278f s 5 4
Rhizobium leguminosarum bv. trifolii CC283b s 5 4
Burkholderia ambifaria AMMD s 5 4
Rhizobium tropici s 6 5
Agrobacterium rhizogenes s 5 4
Burkholderia oklahomensis s 5 4
Burkholderia oklahomensis C6786 s 5 4
Burkholderia ambifaria AMMD s 5 4
Burkholderia oklahomensis EO147 s 5 4
Burkholderia oklahomensis C6786 s 5 4
Nostoc sp. KVJ20 s 5 4
Bradyrhizobium elkanii s 6 5

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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