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Genomes encoding eukaryotic-like proteins

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PF01909 Nucleotidyltransferase domain

Copy number in non-pathogens:
Mean=1.52 Stddev=2.01

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Microcystis aeruginosa NIES-843 s 5 12
Parabacteroides distasonis s 4 10
Parabacteroides distasonis s 5 12
Parabacteroides sp. D26 s 5 12
Geminocystis herdmanii PCC 6308 s 12 26
Leptolyngbya boryana PCC 6306 s 4 10
Pleurocapsa sp. PCC 7319 s 4 10
Desulfitobacterium hafniense DP7 s 4 10
Parabacteroides gordonii DSM 23371 s 4 10
Parabacteroides distasonis CL09T03C24 s 4 10
Caldicoprobacter oshimai DSM 21659 s 4 11
Clostridium grantii DSM 8605 s 7 16
Parabacteroides gordonii MS-1 s 4 10
Clostridium botulinum s 4 10
Clostridium botulinum s 4 10
Clostridium botulinum s 4 11
Clostridium botulinum s 4 10
Clostridium botulinum s 4 10
Clostridium botulinum s 4 10
Clostridium botulinum s 4 11
Clostridium botulinum s 4 11
Sulfurovum riftiae s 4 10
Escherichia coli s 4 10
Ruminiclostridium sp. KB18 s 5 13
Moorella thermoacetica s 4 10
Moorella thermoacetica s 4 10
Clostridium botulinum s 4 10
Clostridium botulinum s 4 10

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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