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Genomes encoding eukaryotic-like proteins

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PF05544 Proline racemase

Copy number in non-pathogens:
Mean=0.49 Stddev=0.90

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Paraburkholderia mimosarum LMG 23256 = NBRC 106338 s 5 5
Mesorhizobium plurifarium s 5 5
Burkholderia multivorans CGD2M s 5 5
Burkholderia sp. BT03 s 5 5
Pseudomonas sp. GM79 s 5 5
Ensifer sp. BR816 s 7 7
Rhizobium leguminosarum bv. trifolii WSM597 s 5 5
Burkholderia multivorans CGD2 s 5 5
Sinorhizobium arboris LMG 14919 s 6 6
Rhizobium mesoamericanum STM6155 s 6 6
Paraburkholderia mimosarum LMG 23256 = NBRC 106338 s 5 5
Mesorhizobium erdmanii USDA 3471 s 5 5
Synergistes sp. 3_1_syn1 s 5 5
Rhizobium sp. CIAT894 s 5 5
Mesorhizobium amorphae CCNWGS0123 s 5 5
Burkholderia sp. UYPR1.413 s 8 8
Paraburkholderia nodosa DSM 21604 s 5 5
Ensifer sp. WSM1721 s 5 5
Rhizobium etli CIAT 652 s 5 5
Lactonifactor longoviformis DSM 17459 s 5 5
Bosea sp. 117 s 6 6
Burkholderia cepacia s 5 5
Pseudomonas fluorescens s 5 5
Burkholderia cepacia s 5 5
Burkholderia cepacia s 7 7
Rhizobium phaseoli s 5 5
Rhizobium phaseoli s 5 5
Rhizobium phaseoli s 5 5
Rhizobium phaseoli s 5 5
Rhizobium sp. N1314 s 5 5
Rhizobium sp. N731 s 5 5
Sinorhizobium saheli s 5 5
Mesorhizobium amorphae CCNWGS0123 s 5 5
Burkholderia sp. BT03 s 5 5

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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