Effective results for Gallibacterium anatis UMN179 (eggnog40)

Summary

Number of putative secreted proteins: 44
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 44 proteins (1 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1005058.UMN179_01304(PF13276)ER
1005058.UMN179_02445(PF13332)mitochondrial
1005058.UMN179_00416(PF13332)mitochondrial; (mitochondrial)
1005058.UMN179_02244(PF13332)mitochondrial
1005058.UMN179_01313(PF13276)mitochondrial; (mitochondrial)
1005058.UMN179_00803(PF12323)(mitochondrial)
1005058.UMN179_01270(PF12323)(mitochondrial)
1005058.UMN179_01305(PF13518)
1005058.UMN179_00552(PF13518)
1005058.UMN179_01082(PF12323)
1005058.UMN179_00817(PF13276)
1005058.UMN179_00616(PF12323)
1005058.UMN179_01980(PF12323)
1005058.UMN179_00807(PF12323)
1005058.UMN179_00773(PF12323)
1005058.UMN179_02425(PF12323)
1005058.UMN179_01343(PF12323)
1005058.UMN179_02440(PF13518)
1005058.UMN179_02067(PF12323)
1005058.UMN179_00003(PF13276)
1005058.UMN179_01415(PF12323)
1005058.UMN179_01411(PF12323)
1005058.UMN179_01380(PF13276)
1005058.UMN179_01758(PF05167)
1005058.UMN179_01759(PF05167)
1005058.UMN179_02382(PF13518)
1005058.UMN179_00551(PF13276)
1005058.UMN179_00428(PF13276)
1005058.UMN179_00739(PF12323)
1005058.UMN179_01068(PF13276)
1005058.UMN179_02485(PF05929)
1005058.UMN179_00418(PF13332)
1005058.UMN179_00420(PF13332)
1005058.UMN179_01824(PF12323)
1005058.UMN179_01052(PF13276)
1005058.UMN179_02349(PF13276)
1005058.UMN179_02355(PF13518)
1005058.UMN179_00219(PF12323)
1005058.UMN179_02368PF10548
1005058.UMN179_02149(PF12323)
1005058.UMN179_00154(PF04664)
1005058.UMN179_00152(PF13276)
1005058.UMN179_02374(PF13276)
1005058.UMN179_00237(PF05929)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================