Effective results for Haemophilus haemolyticus M19501 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 30 proteins (5 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1028803.GG9_0044(PF13518)(mitochondrial)
1028803.GG9_0074(PF04886)(ER)
1028803.GG9_1316(PF03948) (PF01281)
1028803.GG9_0522(PF03948) (PF01281)
1028803.GG9_0896(PF10063)
1028803.GG9_1313(PF01250)
1028803.GG9_0525(PF01250)
1028803.GG9_1334(PF13518)
1028803.GG9_1337(PF13184)
1028803.GG9_1336(PF11987)
1028803.GG9_1330(PF13518)
1028803.GG9_0936(PF13518)
1028803.GG9_0937(PF02033)
1028803.GG9_0932(PF13184)
1028803.GG9_0933(PF11987)
1028803.GG9_1333(PF02033)
1028803.GG9_1332(PF01509)
1028803.GG9_1338(PF02576)
1028803.GG9_1197(PF00958)
1028803.GG9_0913PF00572
1028803.GG9_0914PF00380
1028803.GG9_0266(PF10571)
1028803.GG9_1018(PF13518)
1028803.GG9_0938(PF01509)
1028803.GG9_1354PF00380
1028803.GG9_0931(PF02576)
1028803.GG9_1355PF00572
1028803.GG9_0191PF02551
1028803.GG9_0941(PF13518)
1028803.GG9_1202(PF00958)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================