Effective results for Lactobacillus ruminis SPM0211 (eggnog40)

Summary

Number of putative secreted proteins: 46
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 46 proteins (2 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1040964.LRU_01700				(PF13127)	ER
1040964.LRU_00432				(PF02485)	(ER)
1040964.LRU_01196				(PF00872)	(mitochondrial)
1040964.LRU_00928				(PF13518)
1040964.LRU_00927				(PF13276)
1040964.LRU_01253				(PF00872)
1040964.LRU_02208				(PF00872)
1040964.LRU_01304				(PF00872)
1040964.LRU_01874				(PF05495)
1040964.LRU_00198				(PF00872)
1040964.LRU_01467				(PF04765)
1040964.LRU_01469				(PF04991)
1040964.LRU_00857				(PF00872)
1040964.LRU_00985				(PF00872)
1040964.LRU_02152				PF08357
1040964.LRU_01447				(PF02485)
1040964.LRU_00884				(PF00872)
1040964.LRU_01121				(PF00872)
1040964.LRU_00894				(PF13276)
1040964.LRU_00557				(PF13276)
1040964.LRU_00558				(PF13518)
1040964.LRU_01429				(PF04991)
1040964.LRU_01556				(PF00872)
1040964.LRU_00610				(PF13518)
1040964.LRU_00611				(PF13276)
1040964.LRU_01083				(PF03577)
1040964.LRU_01884				PF08357
1040964.LRU_00627				(PF13276)
1040964.LRU_00628				(PF13518)
1040964.LRU_00025				(PF13276)
1040964.LRU_00026				(PF13518)
1040964.LRU_01575				(PF13276)
1040964.LRU_00368				(PF13518)
1040964.LRU_00367				(PF13276)
1040964.LRU_02073				(PF13276)
1040964.LRU_01508				(PF00872)
1040964.LRU_01211				(PF00872)
1040964.LRU_01219				(PF00872)
1040964.LRU_01179				(PF04991)
1040964.LRU_01411				(PF00872)
1040964.LRU_01996				(PF00872)
1040964.LRU_00343				(PF03577)
1040964.LRU_01522				(PF13276)
1040964.LRU_01233				(PF13276)
1040964.LRU_00934				(PF00872)
1040964.LRU_02318				(PF03577)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================