Effective results for Streptococcus pseudopneumoniae IS7493 (eggnog40)

Summary

Number of putative secreted proteins: 111
- Predicted by T4SEpre: 110
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 28 proteins (3 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1054460.SPPN_07015+ER
1054460.SPPN_00190+mitochondrial; (mitochondrial)
1054460.SPPN_01100PF09683ER
1054460.SPPN_00960+ER; (ER)
1054460.SPPN_06385+ER
1054460.SPPN_11160+ER
1054460.SPPN_05045+ER
1054460.SPPN_05040+ER
1054460.SPPN_08445+ER
1054460.SPPN_04145(PF06280)(ER)
1054460.SPPN_00240+ER
1054460.SPPN_00520+(mitochondrial)
1054460.SPPN_04605+ER
1054460.SPPN_09885+mitochondrial; (mitochondrial)
1054460.SPPN_01390+ER
1054460.SPPN_00065+ER
1054460.SPPN_06615+ER
1054460.SPPN_00615+ER
1054460.SPPN_02500+ER
1054460.SPPN_09235+mitochondrial
1054460.SPPN_08835+ER
1054460.SPPN_03565PF09683ER
1054460.SPPN_10200PF09683ER
1054460.SPPN_01455+mitochondrial
1054460.SPPN_07655+ER
1054460.SPPN_03355(PF06280)ER
1054460.SPPN_03175+mitochondrial
1054460.SPPN_02085(PF03714)(mitochondrial)
1054460.SPPN_08360+(mitochondrial); (plastid)
1054460.SPPN_04135+ER
1054460.SPPN_01015+ER
1054460.SPPN_00010+mitochondrial; (mitochondrial)
1054460.SPPN_09350+(mitochondrial)
1054460.SPPN_07555+(mitochondrial)
1054460.SPPN_01075+(mitochondrial)
1054460.SPPN_10110+(mitochondrial)
1054460.SPPN_07060+(mitochondrial)
1054460.SPPN_00375+
1054460.SPPN_07430(PF13592)
1054460.SPPN_06740(PF04991)
1054460.SPPN_07195+
1054460.SPPN_10645+
1054460.SPPN_06170+
1054460.SPPN_02905(PF13359)
1054460.SPPN_07160(PF13359)
1054460.SPPN_03335+
1054460.SPPN_02640+
1054460.SPPN_05595+
1054460.SPPN_09635+
1054460.SPPN_01900+
1054460.SPPN_10175+
1054460.SPPN_02490+
1054460.SPPN_11390+
1054460.SPPN_00535(PF13592)
1054460.SPPN_04700(PF13359)
1054460.SPPN_06520(PF13359)
1054460.SPPN_09010+
1054460.SPPN_09275+
1054460.SPPN_10975+
1054460.SPPN_04770(PF13592)
1054460.SPPN_04910(PF13359)
1054460.SPPN_02700+
1054460.SPPN_07935(PF03596)
1054460.SPPN_08605(PF08975)
1054460.SPPN_08110+
1054460.SPPN_00265+
1054460.SPPN_06500+
1054460.SPPN_09075+
1054460.SPPN_05555(PF03714)
1054460.SPPN_06325(PF04991)
1054460.SPPN_05375+
1054460.SPPN_10950(PF13359)
1054460.SPPN_10005+
1054460.SPPN_06405(PF13592)
1054460.SPPN_03035+
1054460.SPPN_03740(PF13592)
1054460.SPPN_10225+
1054460.SPPN_11265+
1054460.SPPN_01710+
1054460.SPPN_07105+
1054460.SPPN_03935(PF03596)
1054460.SPPN_02995+
1054460.SPPN_06415(PF13359)
1054460.SPPN_00455+
1054460.SPPN_06390+
1054460.SPPN_06330(PF04991)
1054460.SPPN_02365+
1054460.SPPN_02960+
1054460.SPPN_08375+
1054460.SPPN_01045+
1054460.SPPN_10695+
1054460.SPPN_02170(PF13592)
1054460.SPPN_10870+
1054460.SPPN_03590+
1054460.SPPN_05685+
1054460.SPPN_08365+
1054460.SPPN_04460+
1054460.SPPN_10910+
1054460.SPPN_07465+
1054460.SPPN_02435+
1054460.SPPN_08990+
1054460.SPPN_10895+
1054460.SPPN_11300+
1054460.SPPN_02930(PF03644)
1054460.SPPN_05530+
1054460.SPPN_01780+
1054460.SPPN_07625+
1054460.SPPN_10060+
1054460.SPPN_07245(PF13359)
1054460.SPPN_05815+
1054460.SPPN_02455+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================