Effective results for Azospirillum brasilense Sp245 (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 15 proteins (2 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1064539.AZOBR_100254(PF06455)ER
1064539.AZOBR_40432(PF13436)ER
1064539.AZOBR_60012(PF09370)mitochondrial; (mitochondrial)
1064539.AZOBR_20004(PF00614)(plastid)
1064539.AZOBR_150241PF00410mitochondrial; not used
1064539.AZOBR_180019(PF11563)
1064539.AZOBR_200170(PF11563)
1064539.AZOBR_130030(PF11563)
1064539.AZOBR_150242PF00410
1064539.AZOBR_10054(PF09731)
1064539.AZOBR_60011(PF09370)
1064539.AZOBR_60009(PF09370)
1064539.AZOBR_180114(PF11563)
1064539.AZOBR_10072(PF00614)
1064539.AZOBR_100146(PF14701)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================