Effective results for Synechococcus elongatus PCC 7942 (eggnog40)

Summary

Number of putative secreted proteins: 137
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 114 eukaryotic-like domains, contained in 137 proteins (5 high, 132 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1140.Synpcc7942_1231(PF16639) (PF01333)mitochondrial
1140.Synpcc7942_2234(PF11909)(mitochondrial)
1140.Synpcc7942_2487(PF11910)(mitochondrial)
1140.Synpcc7942_1038(PF01789)ER
1140.Synpcc7942_0379(PF11317)ER
1140.Synpcc7942_0192(PF16166)(ER)
1140.Synpcc7942_0995(PF04483)ER
1140.Synpcc7942_1137(PF04481)(mitochondrial); (plastid)
1140.Synpcc7942_0531(PF09295)ER
1140.Synpcc7942_1250(PF02507)ER
1140.Synpcc7942_1497(PF11016)ER
1140.Synpcc7942_1673(PF11152)ER; (ER)
1140.Synpcc7942_0339(PF11805)(ER)
1140.Synpcc7942_1862(PF04278)ER
1140.Synpcc7942_0343(PF13326)ER
1140.Synpcc7942_2245(PF01737)ER
1140.Synpcc7942_2438(PF07444)ER
1140.Synpcc7942_0675(PF12046)ER
1140.Synpcc7942_0072(PF09366)ER
1140.Synpcc7942_0294(PF01716)ER
1140.Synpcc7942_0921(PF12159)ER
1140.Synpcc7942_2566PF05757ER
1140.Synpcc7942_0591(PF01169)ER
1140.Synpcc7942_1882(PF06514)ER
1140.Synpcc7942_1526(PF12483)ER
1140.Synpcc7942_1555(PF11264)(mitochondrial)
1140.Synpcc7942_2398(PF03652)(mitochondrial)
1140.Synpcc7942_0412(PF11460)ER
1140.Synpcc7942_1165(PF09830)ER
1140.Synpcc7942_2015(PF07444)ER
1140.Synpcc7942_1962(PF06298)ER; not used
1140.Synpcc7942_0197(PF03092)(ER)
1140.Synpcc7942_1802(PF12452)(ER)
1140.Synpcc7942_1249(PF01701)(mitochondrial); not used
1140.Synpcc7942_0224(PF02468)ER; not used
1140.Synpcc7942_2407(PF13911)(ER)
1140.Synpcc7942_0304(PF05019)(mitochondrial)
1140.Synpcc7942_1528(PF10693)(ER)
1140.Synpcc7942_2563(PF04423)(mitochondrial)
1140.Synpcc7942_0413(PF10716)(plastid)
1140.Synpcc7942_1176(PF00283)(ER); not used
1140.Synpcc7942_1177(PF00284) (PF00283)
1140.Synpcc7942_0624(PF12617)
1140.Synpcc7942_0397(PF12899)
1140.Synpcc7942_0407(PF01241)
1140.Synpcc7942_0574(PF12204)
1140.Synpcc7942_0880(PF09366)
1140.Synpcc7942_1579(PF05706)
1140.Synpcc7942_1759(PF00504)
1140.Synpcc7942_B2655(PF13271)
1140.Synpcc7942_0768(PF05019)
1140.Synpcc7942_1966(PF12095)
1140.Synpcc7942_0361(PF02672)
1140.Synpcc7942_0165(PF06799)
1140.Synpcc7942_0988(PF10674)
1140.Synpcc7942_1106(PF08847)
1140.Synpcc7942_1637(PF00124)
1140.Synpcc7942_0772(PF06206)
1140.Synpcc7942_0771PF16865
1140.Synpcc7942_0991(PF03040)
1140.Synpcc7942_1002(PF02531)
1140.Synpcc7942_1131(PF02941)
1140.Synpcc7942_2294(PF01501)
1140.Synpcc7942_1908(PF11210)
1140.Synpcc7942_0699(PF05151)not used
1140.Synpcc7942_0528(PF01501)
1140.Synpcc7942_2478(PF03912)
1140.Synpcc7942_2300(PF11947)
1140.Synpcc7942_1930(PF09353)
1140.Synpcc7942_0356(PF05421)
1140.Synpcc7942_1331(PF00504)not used
1140.Synpcc7942_0225(PF00737)
1140.Synpcc7942_0047(PF03016)
1140.Synpcc7942_1022(PF07082)
1140.Synpcc7942_2049(PF00223)
1140.Synpcc7942_2048(PF00223)
1140.Synpcc7942_B2617(PF03079)
1140.Synpcc7942_1258(PF10184)
1140.Synpcc7942_0252(PF02672)
1140.Synpcc7942_1077(PF11267)
1140.Synpcc7942_1322(PF02427)
1140.Synpcc7942_1479(PF02529)not used
1140.Synpcc7942_2257(PF11623)not used
1140.Synpcc7942_1866(PF08854)
1140.Synpcc7942_0800(PF06206)
1140.Synpcc7942_0696(PF01405)not used
1140.Synpcc7942_1679(PF03912)
1140.Synpcc7942_0658(PF10999)
1140.Synpcc7942_0654(PF02392)
1140.Synpcc7942_0655(PF00124)
1140.Synpcc7942_0475PF03742not used
1140.Synpcc7942_1306(PF11371)
1140.Synpcc7942_0873(PF13271)
1140.Synpcc7942_1271(PF01501)
1140.Synpcc7942_2430PF02005
1140.Synpcc7942_2342(PF02605)
1140.Synpcc7942_2343(PF00796)not used
1140.Synpcc7942_2345(PF04839)
1140.Synpcc7942_1990(PF01169)
1140.Synpcc7942_0265(PF11341)
1140.Synpcc7942_1196(PF11347)
1140.Synpcc7942_1423(PF00101)
1140.Synpcc7942_1427(PF00101)
1140.Synpcc7942_1734(PF02943)
1140.Synpcc7942_2426(PF08041)not used
1140.Synpcc7942_0456(PF02533)not used
1140.Synpcc7942_1982(PF10664)
1140.Synpcc7942_0920(PF01241)
1140.Synpcc7942_2164(PF08417)
1140.Synpcc7942_0590(PF01169)
1140.Synpcc7942_0286(PF08853)
1140.Synpcc7942_1535(PF02341)
1140.Synpcc7942_2578(PF11360)
1140.Synpcc7942_2572(PF08855)
1140.Synpcc7942_1949(PF11378)
1140.Synpcc7942_0129(PF03652)
1140.Synpcc7942_1524(PF04983)
1140.Synpcc7942_1523(PF04983)
1140.Synpcc7942_0243(PF00504)not used
1140.Synpcc7942_1705(PF02532)not used
1140.Synpcc7942_1706(PF12600)
1140.Synpcc7942_0608(PF03079)
1140.Synpcc7942_0424(PF00124)
1140.Synpcc7942_0558(PF11833)
1140.Synpcc7942_1174(PF01788)not used
1140.Synpcc7942_1175PF02419not used
1140.Synpcc7942_1600(PF09830)
1140.Synpcc7942_1601(PF10013)not used
1140.Synpcc7942_2397(PF12527)
1140.Synpcc7942_0091(PF01947)
1140.Synpcc7942_0145(PF11282)
1140.Synpcc7942_1943(PF13355)
1140.Synpcc7942_1389(PF00124)
1140.Synpcc7942_0893(PF00124)
1140.Synpcc7942_0562(PF12049)
1140.Synpcc7942_2018(PF11998)
1140.Synpcc7942_2016(PF06596)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================