Effective results for Prochlorococcus marinus str. MIT 9515 (eggnog40)

Summary

Number of putative secreted proteins: 106
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 87 eukaryotic-like domains, contained in 106 proteins (8 high, 98 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
167542.P9515_05251(PF16639) (PF01333)ER
167542.P9515_09091(PF08491)(ER)
167542.P9515_17701(PF12046)(ER)
167542.P9515_05641(PF11016)ER
167542.P9515_19021(PF00862)(ER); ER
167542.P9515_03471(PF00421)(mitochondrial)
167542.P9515_15931PF02468ER
167542.P9515_05331(PF02507)ER
167542.P9515_08871(PF00504)ER
167542.P9515_09461(PF11152)ER
167542.P9515_07861(PF12452)ER
167542.P9515_11891(PF01789)mitochondrial
167542.P9515_17791(PF05996)(mitochondrial)
167542.P9515_04011(PF11196)ER
167542.P9515_05711(PF13326)ER
167542.P9515_12531PF02077ER
167542.P9515_06361(PF11460)ER
167542.P9515_18341(PF01737)ER
167542.P9515_04521(PF08853)(mitochondrial)
167542.P9515_02601(PF01716)ER
167542.P9515_06351(PF10716)ER
167542.P9515_01251(PF05421)(ER)
167542.P9515_02871(PF12600)(mitochondrial)
167542.P9515_03301(PF00284) (PF00283)
167542.P9515_05321(PF01701)ER; not used
167542.P9515_03311(PF00283)(ER); not used
167542.P9515_03491(PF05151)ER; not used
167542.P9515_02861(PF02532)ER; not used
167542.P9515_16261(PF11805)(ER)
167542.P9515_17411(PF11909)(mitochondrial)
167542.P9515_02841(PF00737)(mitochondrial)
167542.P9515_02851PF02468ER; not used
167542.P9515_06901(PF09493)(ER)
167542.P9515_08401(PF11347)(ER)
167542.P9515_03051(PF02533)not used
167542.P9515_17031(PF00223)
167542.P9515_02931(PF11378)
167542.P9515_09771(PF11360)
167542.P9515_01351(PF11910)
167542.P9515_17021(PF00223)
167542.P9515_18401(PF04481)
167542.P9515_05271(PF11267)
167542.P9515_03211PF00493
167542.P9515_08431(PF11264)
167542.P9515_03321PF02419not used
167542.P9515_17421(PF12617)
167542.P9515_06871(PF01744)
167542.P9515_09881(PF12159)not used
167542.P9515_08841(PF09493)
167542.P9515_03331(PF01788)
167542.P9515_07221PF10999
167542.P9515_12921(PF00504)
167542.P9515_11101(PF04755)
167542.P9515_15761PF10999
167542.P9515_12751(PF00283)
167542.P9515_13191(PF08041)not used
167542.P9515_13371(PF08854)
167542.P9515_06851(PF07082)
167542.P9515_01211(PF12095)
167542.P9515_10271(PF11947)
167542.P9515_18661(PF01947)
167542.P9515_09291(PF04483)
167542.P9515_03611(PF02427)
167542.P9515_03591(PF12899)
167542.P9515_17461(PF00504)not used
167542.P9515_09861(PF10693)
167542.P9515_11481(PF02529)not used
167542.P9515_07911(PF12527)
167542.P9515_02641(PF04483)
167542.P9515_13231(PF02392)
167542.P9515_14781(PF00504)
167542.P9515_10141(PF11282)
167542.P9515_17651(PF02531)
167542.P9515_17921(PF11623)
167542.P9515_13441(PF13911)
167542.P9515_00711(PF06596)
167542.P9515_16641(PF04983)
167542.P9515_11971(PF10674)
167542.P9515_12081(PF06298)not used
167542.P9515_16631(PF04983)
167542.P9515_14481(PF13355)
167542.P9515_01731(PF10664)
167542.P9515_00731(PF00504)
167542.P9515_11361(PF11196)
167542.P9515_07371(PF11833)
167542.P9515_16531(PF11341)
167542.P9515_16751(PF11998)
167542.P9515_13421(PF00421)
167542.P9515_17801(PF05996)
167542.P9515_09211(PF11210)
167542.P9515_01741(PF11371)
167542.P9515_17501PF10999
167542.P9515_07181(PF16166)
167542.P9515_12331(PF04755)
167542.P9515_14861(PF11317)
167542.P9515_14911(PF08855)
167542.P9515_09681(PF09353)
167542.P9515_08371(PF05996)
167542.P9515_08971(PF06799)
167542.P9515_07401(PF12049)
167542.P9515_16191(PF04839)
167542.P9515_16991(PF02605)
167542.P9515_13251(PF00421)
167542.P9515_06931(PF00421)
167542.P9515_04081(PF03492)
167542.P9515_08891(PF00504)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================