Effective results for Clostridium perfringens ATCC 13124 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 63 proteins (14 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
195103.CPF_1489				(PF08305) (PF13402) (PF16403) (PF00754)	ER
195103.CPF_1073				(PF08305) (PF13402) (PF16403) (PF00754)	(ER)
195103.CPF_1442				PF07555 (PF00754)	ER
195103.CPF_0532				PF12135 (PF00754)	ER
195103.CPF_0184				PF07555 (PF00754)	ER; (ER)
195103.CPF_1487				PF07555 (PF00754)	ER; (ER)
195103.CPF_0042				PF00882 (PF01477)	ER
195103.CPF_0285				(PF03644) (PF00754)	ER
195103.CPF_0875				PF07555 (PF00754)	mitochondrial; (mitochondrial)
195103.CPF_1614				PF12135 (PF00754)	(ER)
195103.CPF_0815				(PF03644) (PF00754)	ER
195103.CPF_1775				(PF14566)	ER
195103.CPF_0771				(PF05738)	ER
195103.CPF_0774				(PF05738)	ER; (ER)
195103.CPF_2686				(PF00163)	mitochondrial
195103.CPF_1221				(PF08305)	(ER)
195103.CPF_0147				(PF05738)	ER
195103.CPF_0146				(PF05738)	ER
195103.CPF_1301				(PF00754)	ER
195103.CPF_1472				(PF00754)	ER
195103.CPF_1087				(PF16403)	ER
195103.CPF_2129				(PF08305)	ER
195103.CPF_0859				(PF00754)	ER
195103.CPF_2130				(PF00754)	ER
195103.CPF_2922				(PF11070)	ER
195103.CPF_0471				(PF16889)	(mitochondrial)
195103.CPF_0726				(PF01902)	(mitochondrial)
195103.CPF_0123				(PF05738)	ER
195103.CPF_0122				(PF05738)	ER
195103.CPF_1299				(PF01902)	(mitochondrial); mitochondrial
195103.CPF_2668				(PF00163)	mitochondrial
195103.CPF_0681				(PF02915)
195103.CPF_1853				(PF06968)
195103.CPF_1795				(PF06968)
195103.CPF_0368				(PF02915)
195103.CPF_1893				(PF01991)
195103.CPF_2955				(PF02915)
195103.CPF_1851				PF12646
195103.CPF_0406				(PF16889)
195103.CPF_2484				(PF01633)
195103.CPF_2482				(PF01633)
195103.CPF_0985				PF13859
195103.CPF_2775				(PF06968)
195103.CPF_0608				(PF01633)
195103.CPF_2590				PF00882
195103.CPF_1076				(PF02915)
195103.CPF_0708				PF00882
195103.CPF_2637				(PF02915)
195103.CPF_2911				(PF12638)
195103.CPF_0077				(PF02915)
195103.CPF_1712				(PF00754)
195103.CPF_2359				(PF12513)
195103.CPF_0847				(PF02915)
195103.CPF_1538				(PF02915)
195103.CPF_0652				(PF00754)
195103.CPF_1636				PF00882
195103.CPF_0725				PF06467	not used
195103.CPF_0013				(PF07892)
195103.CPF_2890				PF12646
195103.CPF_1288				(PF01633)
195103.CPF_0133				(PF02915)
195103.CPF_0106				(PF06968)
195103.CPF_2873				(PF07892)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================