Effective results for Escherichia coli CFT073 (eggnog40)

Summary

Number of putative secreted proteins: 242
- Predicted by T4SEpre: 112
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 143 proteins (0 high, 143 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
199310.c3553(PF03711) (PF01276)(mitochondrial); (plastid)
199310.c0079+mitochondrial; (mitochondrial)
199310.c4767(PF00549)(mitochondrial)
199310.c3914(PF03222)(ER); ER
199310.c1996+ER
199310.c3610+ER
199310.c3612(PF01527)(ER)
199310.c4390+ER
199310.c0003(PF00696)(mitochondrial); mitochondrial
199310.c0478(PF03797)ER; (ER)
199310.c1877+(mitochondrial)
199310.c1474(PF08242)(ER)
199310.c4366(PF03797)mitochondrial
199310.c0700(PF00939)ER
199310.c4632(PF03222)(ER)
199310.c3630+(ER)
199310.c0393(PF03797)(mitochondrial)
199310.c0651(PF08242)(ER)
199310.c2894(PF03797)(mitochondrial)
199310.c0819+ER
199310.c1811+ER
199310.c2476+ER
199310.c2712+(ER); ER
199310.c1266+ER
199310.c3025+ER
199310.c1803+ER
199310.c3655(PF03797)mitochondrial
199310.c4284(PF01116)(mitochondrial)
199310.c1654(PF01204)ER
199310.c0757(PF00939)ER
199310.c4197(PF05189)(mitochondrial)
199310.c3640+(PF01527)(mitochondrial)
199310.c3081+ER
199310.c1121(PF00328)ER
199310.c5037(PF00549)(mitochondrial)
199310.c1737(PF01343)ER; (ER)
199310.c3078+mitochondrial; ER
199310.c3180(PF00959)ER
199310.c1137(PF00328)ER
199310.c1356+(mitochondrial)
199310.c2323(PF03222)ER; (ER)
199310.c0610+ER
199310.c1617(PF13436)ER
199310.c2621(PF01116)(mitochondrial)
199310.c1108+(mitochondrial)
199310.c2136+ER; (ER)
199310.c0345(PF13332)ER
199310.c4890(PF05708)ER
199310.c3338+mitochondrial; ER
199310.c1204+ER
199310.c3838(PF01204)ER
199310.c0893+ER
199310.c4786+ER
199310.c4237+ER
199310.c2182+(mitochondrial)
199310.c5259+ER
199310.c3953+ER
199310.c0426(PF03797)mitochondrial
199310.c0957(PF00959)ER
199310.c3814(PF00939)ER
199310.c2966+ER
199310.c2170(PF01343)ER
199310.c0234(PF05708)ER
199310.c1436(PF00959)ER
199310.c4102+ER
199310.c3011+ER
199310.c0847(PF00939)ER
199310.c4229+mitochondrial; (mitochondrial)
199310.c2428(PF08242)(mitochondrial)
199310.c4910(PF01228)(mitochondrial)
199310.c1423+ER
199310.c4354(PF03222)(mitochondrial)
199310.c3931+ER
199310.c4548+(mitochondrial); mitochondrial
199310.c3170(PF01343)mitochondrial
199310.c4018(PF01116)(mitochondrial)
199310.c3619(PF03797)(mitochondrial)
199310.c4484(PF01116)(mitochondrial)
199310.c4389+(mitochondrial)
199310.c0635(PF00696)(mitochondrial)
199310.c5122(PF03711) (PF01276)
199310.c0397(PF03400)(mitochondrial); not used
199310.c4058+(mitochondrial)
199310.c4537(PF01228)(mitochondrial)
199310.c5197+(PF13276)
199310.c2426+(ER)
199310.c2760+(mitochondrial)
199310.c0777(PF03711) (PF01276)
199310.c3218+(mitochondrial)
199310.c2922(PF05524)(mitochondrial)
199310.c3375+(mitochondrial)
199310.c3442(PF03222)(ER)
199310.c4501(PF03711) (PF01276)
199310.c1596+(plastid)
199310.c1205(PF13332)(mitochondrial)
199310.c1206(PF13332)(mitochondrial)
199310.c1562(PF00959)(ER)
199310.c0224(PF03711) (PF01276)
199310.c3574+(ER)
199310.c5140(PF03711) (PF01276)
199310.c2304+(mitochondrial)
199310.c0444+(PF00696)
199310.c2429(PF08242)(mitochondrial)
199310.c5168(PF01527)
199310.c5167(PF13276)
199310.c4581+
199310.c4764(PF00696)
199310.c1085+
199310.c1358+
199310.c2240+
199310.c1846+
199310.c3103(PF01228)
199310.c3617(PF01527)
199310.c3611(PF13276)
199310.c5622+
199310.c3725(PF03738)
199310.c5196(PF01527)
199310.c4483(PF01116)
199310.c5178(PF13276)
199310.c5177(PF01527)
199310.c1448(PF01343)
199310.c4396(PF02615)
199310.c1615(PF03797)
199310.c4157+
199310.c0470+
199310.c0908(PF01228)
199310.c2520+
199310.c0872+
199310.c2410+
199310.c2418+
199310.c3424(PF05524)
199310.c4815+
199310.c1273(PF03797)
199310.c4387+
199310.c0642+
199310.c0805(PF00549)
199310.c0806(PF00549)
199310.c3120+
199310.c3129+
199310.c3822+
199310.c4104+
199310.c3440+
199310.c3412(PF00696)
199310.c1263(PF01527)
199310.c1262(PF13276)
199310.c4552(PF01527)
199310.c4733+
199310.c4045+
199310.c2472(PF01527)
199310.c0256(PF01527)
199310.c1380+
199310.c3409+
199310.c0389(PF00696)
199310.c2276(PF05708)
199310.c0128+
199310.c0621+
199310.c1715+
199310.c2447+
199310.c3659(PF01527)
199310.c4533+
199310.c2053+
199310.c3503(PF01116)
199310.c0286+
199310.c4990(PF00696)
199310.c1656(PF05524)
199310.c3894(PF01116)
199310.c4663+
199310.c3874(PF03222)
199310.c0631(PF02615)
199310.c3872(PF01228)
199310.c4527+
199310.c5036(PF00549)
199310.c5038(PF00939)
199310.c5039(PF02615)
199310.c5213(PF13276)
199310.c5214(PF01527)
199310.c4453(PF01501)
199310.c4452(PF01501)
199310.c4450(PF01501)
199310.c3883+
199310.c3452(PF00696)
199310.c0354(PF01527)
199310.c0350(PF03797)
199310.c1225(PF01527)
199310.c4086+
199310.c4088+
199310.c1619(PF03797)
199310.c4504(PF03400)
199310.c4507(PF13276)
199310.c5272+
199310.c5274(PF03738)
199310.c4659+
199310.c4893(PF00696)
199310.c5461+
199310.c4090+
199310.c0885(PF02615)
199310.c2951(PF05524)
199310.c4451(PF06176)
199310.c3940+
199310.c4001+
199310.c2549+
199310.c2557+
199310.c1168(PF03400)
199310.c5258+
199310.c1572(PF01343)
199310.c0954+
199310.c3784(PF03738)
199310.c0318+
199310.c5064+
199310.c3560(PF01527)
199310.c0138(PF01527)
199310.c0139(PF13276)
199310.c4330(PF01204)
199310.c0046+
199310.c2177(PF01116)
199310.c2775(PF03797)
199310.c3575(PF13276)
199310.c3577(PF01527)
199310.c3576(PF01527)
199310.c4498(PF03400)
199310.c0232(PF13276)
199310.c5349(PF00696)
199310.c1637+
199310.c1553(PF13276)
199310.c1552(PF01527)
199310.c3225+
199310.c0441(PF00549)
199310.c3580+
199310.c0597+
199310.c2424(PF08242)
199310.c0200+
199310.c0207(PF00696)
199310.c5429+
199310.c4918(PF00696)
199310.c0119(PF13276)
199310.c1520(PF01527)
199310.c1521(PF13276)
199310.c4862+
199310.c3596(PF01527)
199310.c3595(PF13276)
199310.c3753(PF02615)
199310.c4906(PF05524)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.0 (8/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================