Metamenu

Effective results for Chlamydophila abortus S26/3 (eggnog40)

Summary

Number of putative secreted proteins: 168
- Predicted by EffectiveT3: 69 (high confidence), 64 (low confidence)
- Predicted by EffectiveCCBD: 11 within, 6 before, 8 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 25 proteins (11 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
218497.CAB281+PF02415 (PF03797)ER
218497.CAB265PF02415 (PF03797)ER
218497.CAB266PF02415 (PF03797)ER
218497.CAB268(+)PF02415 (PF03797)ER
218497.CAB269PF02415 (PF03797)mitochondrial; (mitochondrial)
218497.CAB598+(PF03797)ER
218497.CAB710(>)(PF08123)(mitochondrial)
218497.CAB200PF02415 (PF03797)ER
218497.CAB201PF02415 (PF03797)ER
218497.CAB282(+)PF02415 (PF03797)ER
218497.CAB283+PF02415 (PF03797)
218497.CAB934(<)ER
218497.CAB690+mitochondrial; (mitochondrial)
218497.CAB308+ER
218497.CAB041(<)(mitochondrial)
218497.CAB177+(PF05677)(plastid)
218497.CAB759(<)ER
218497.CAB628+mitochondrial; (mitochondrial)
218497.CAB327+(mitochondrial)
218497.CAB666+(mitochondrial)
218497.CAB619(PF09825)ER
218497.CAB683(+)(PF02902)(mitochondrial); plastid
218497.CAB479+ER
218497.CAB156+(mitochondrial)
218497.CAB600+ER
218497.CAB278(PF03797)ER
218497.CAB277(PF03797)ER
218497.CAB649+ER; (ER)
218497.CAB304+(plastid)
218497.CAB125(PF03219)(ER)
218497.CAB708+(plastid)
218497.CAB416+plastid
218497.CAB255+PF10275
218497.CAB788(<)(plastid)
218497.CAB673+plastid
218497.CAB670+(plastid)
218497.CAB365(+)(mitochondrial)
218497.CAB657(+)ER
218497.CAB842(+)mitochondrial
218497.CAB477++
218497.CAB776PF02415 (PF03797)
218497.CAB331+(plastid)
218497.CAB899+(ER)
218497.CAB974+(plastid)
218497.CAB545+(mitochondrial)
218497.CAB014(+)ER
218497.CAB930(<)
218497.CAB581+
218497.CAB588(+)(>)
218497.CAB301+
218497.CAB636(>)
218497.CAB707(PF07720)
218497.CAB706+
218497.CAB267(+)(PF03797)
218497.CAB550+
218497.CAB557(>)
218497.CAB554+
218497.CAB412+
218497.CAB415+
218497.CAB006+
218497.CAB007+
218497.CAB674+
218497.CAB176+
218497.CAB410+
218497.CAB184+
218497.CAB958(PF02201)
218497.CAB953+
218497.CAB594+
218497.CAB923+
218497.CAB921(PF07720)
218497.CAB314+
218497.CAB311(<)
218497.CAB522(+)(>)
218497.CAB520+
218497.CAB524+
218497.CAB852+
218497.CAB351+
218497.CAB210(>)
218497.CAB218+
218497.CAB402+
218497.CAB766+
218497.CAB329+
218497.CAB325+
218497.CAB063+
218497.CAB810+
218497.CAB617+
218497.CAB723+
218497.CAB724+
218497.CAB241+
218497.CAB536+
218497.CAB659(>)
218497.CAB154+
218497.CAB155+
218497.CAB150(+)(mitochondrial)
218497.CAB151+
218497.CAB924+
218497.CAB487+
218497.CAB483+
218497.CAB123+
218497.CAB576+
218497.CAB476+
218497.CAB775+
218497.CAB333+
218497.CAB509+
218497.CAB351A(+)(mitochondrial)
218497.CAB330+
218497.CAB113(>)
218497.CAB806(+)+
218497.CAB246+
218497.CAB879+
218497.CAB873+
218497.CAB689(+)(mitochondrial)
218497.CAB372+
218497.CAB217+
218497.CAB549(+)(plastid)
218497.CAB420+
218497.CAB421(PF03219)
218497.CAB223(+)(plastid)
218497.CAB764+
218497.CAB162(+)(PF02201)
218497.CAB167+
218497.CAB238(+)
218497.CAB582(+)
218497.CAB560A(+)
218497.CAB302(+)
218497.CAB511(+)
218497.CAB884(+)
218497.CAB954(+)
218497.CAB709(+)
218497.CAB488(+)
218497.CAB003(+)
218497.CAB671(+)
218497.CAB075(+)
218497.CAB821(+)
218497.CAB039(+)
218497.CAB182(+)
218497.CAB922(+)
218497.CAB526(+)
218497.CAB132(+)
218497.CAB033(+)
218497.CAB145(+)
218497.CAB143(+)
218497.CAB910(+)
218497.CAB358(+)
218497.CAB138(+)
218497.CAB816(+)
218497.CAB613(+)
218497.CAB191(+)
218497.CAB196(+)
218497.CAB394(+)
218497.CAB361(+)
218497.CAB740(+)
218497.CAB437(+)
218497.CAB654(+)
218497.CAB294(+)
218497.CAB843(+)
218497.CAB481(+)
218497.CAB482(+)
218497.CAB773(+)
218497.CAB424(+)
218497.CAB336(+)
218497.CAB501(+)
218497.CAB601(+)
218497.CAB876(+)
218497.CAB736(+)
218497.CAB012(+)
218497.CAB408(+)
218497.CAB760(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================