Effective results for Acidithiobacillus ferrooxidans ATCC 23270 (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 34 proteins (2 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
243159.AFE_0888(PF01906)mitochondrial; (mitochondrial)
243159.AFE_0507(PF02899)(mitochondrial)
243159.AFE_2397(PF02899)(mitochondrial)
243159.AFE_0835(PF02899)(mitochondrial)
243159.AFE_0859(PF14721)ER
243159.AFE_3051(PF00016) (PF02788)
243159.AFE_1691(PF00016) (PF02788)
243159.AFE_0509(PF02899)(ER)
243159.AFE_1551(PF00862)(ER)
243159.AFE_2155(PF00016) (PF02788)
243159.AFE_2399(PF02899)(ER)
243159.AFE_0833(PF02899)(ER)
243159.AFE_2746(PF02899)
243159.AFE_2788(PF01906)
243159.AFE_2253(PF07678)
243159.AFE_2019(PF01906)
243159.AFE_2018(PF01906)
243159.AFE_3052(PF00101)
243159.AFE_0434(PF00016)
243159.AFE_1690(PF00101)
243159.AFE_1321(PF01906)
243159.AFE_2869(PF01597)
243159.AFE_3202(PF02823)
243159.AFE_0980(PF01597)
243159.AFE_2850(PF02899)
243159.AFE_0758(PF02823)
243159.AFE_2442PF14712
243159.AFE_1145(PF02899)
243159.AFE_2549(PF01597)
243159.AFE_2547(PF01597)
243159.AFE_1552(PF00862)
243159.AFE_2423(PF02823)
243159.AFE_1197(PF14216)
243159.AFE_0591PF11331

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================