Effective results for marine gamma proteobacterium HTCC2080 (eggnog40)

Summary

Number of putative secreted proteins: 67
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 67 proteins (1 high, 66 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
247639.MGP2080_13728(PF06863) (PF06742)ER
247639.MGP2080_08484(PF06863) (PF06742)ER
247639.MGP2080_01716(PF06863) (PF06742)ER
247639.MGP2080_01541(PF06863) (PF06742)ER
247639.MGP2080_08876(PF06863) (PF06742)ER; (ER)
247639.MGP2080_11378(PF06863) (PF06742)ER
247639.MGP2080_01796(PF13450)(ER)
247639.MGP2080_13723(PF06742)(ER)
247639.MGP2080_14696(PF06863) (PF06742)(ER)
247639.MGP2080_14826(PF13450)ER
247639.MGP2080_09943(PF06742)ER
247639.MGP2080_08836PF01222ER
247639.MGP2080_10468(PF02544)ER
247639.MGP2080_10138(PF03209)(ER)
247639.MGP2080_12043(PF08732)(mitochondrial)
247639.MGP2080_01761(PF17048)(ER)
247639.MGP2080_10183(PF03209)(ER)
247639.MGP2080_01446(PF05721)
247639.MGP2080_10398(PF06742)
247639.MGP2080_00920(PF13450)
247639.MGP2080_14706(PF13582)
247639.MGP2080_06942(PF05721)
247639.MGP2080_01155(PF14863)
247639.MGP2080_13864(PF05721)
247639.MGP2080_11358(PF13450)
247639.MGP2080_11613(PF14336)
247639.MGP2080_12833(PF00848)
247639.MGP2080_02510(PF00848)
247639.MGP2080_11583(PF11815)
247639.MGP2080_10758(PF03982)
247639.MGP2080_13063(PF00848)
247639.MGP2080_08916(PF16884)
247639.MGP2080_02500(PF05721)
247639.MGP2080_14476(PF13759)
247639.MGP2080_13914(PF13450)
247639.MGP2080_11643(PF13450)
247639.MGP2080_05040(PF13450)
247639.MGP2080_02086(PF00848)
247639.MGP2080_12653(PF00848)
247639.MGP2080_06712(PF10013)not used
247639.MGP2080_13228(PF00848)
247639.MGP2080_13133(PF00848)
247639.MGP2080_14014(PF13450)
247639.MGP2080_15011(PF05721)not used
247639.MGP2080_07724(PF13759)
247639.MGP2080_13238(PF16884)
247639.MGP2080_09703(PF05721)
247639.MGP2080_13128(PF16884)
247639.MGP2080_05010(PF05721)
247639.MGP2080_01816(PF13450)
247639.MGP2080_02141(PF13450)
247639.MGP2080_14801(PF14863)
247639.MGP2080_02171(PF16884)
247639.MGP2080_09031(PF05721)
247639.MGP2080_13108(PF16884)
247639.MGP2080_08671(PF10504)
247639.MGP2080_13964(PF13450)
247639.MGP2080_10133(PF13450)
247639.MGP2080_09738(PF13450)
247639.MGP2080_13178(PF00848)
247639.MGP2080_09026(PF09825)
247639.MGP2080_05020(PF00848)
247639.MGP2080_07057(PF16884)
247639.MGP2080_06582(PF14863)
247639.MGP2080_04085(PF00848)
247639.MGP2080_15899(PF05721)
247639.MGP2080_02481(PF00848)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================