Effective results for Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (eggnog40)

Summary

Number of putative secreted proteins: 603
- Predicted by EffectiveT3: 153 (high confidence), 246 (low confidence)
- Predicted by EffectiveCCBD: 32 within, 27 before, 48 behind expected region 25..70aa
- Predicted by T4SEpre: 80
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 57 proteins (0 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
272620.KPN_00303(<)(ER)
272620.KPN_03241(<)(ER)
272620.KPN_03164+ER; (ER)
272620.KPN_03947+(ER)
272620.KPN_00628(PF00328)ER
272620.KPN_02165+ER
272620.KPN_00717(>)ER
272620.KPN_01972(PF00854)ER; (ER)
272620.KPN_02394++(plastid)
272620.KPN_03634(>)ER
272620.KPN_00542+(mitochondrial)
272620.KPN_00381+mitochondrial
272620.KPN_04425+ER
272620.KPN_02038(>)ER
272620.KPN_00427(>)ER
272620.KPN_00426+(mitochondrial)
272620.KPN_00375+(mitochondrial)
272620.KPN_01312(<)(ER); (plastid)
272620.KPN_01605+(ER)
272620.KPN_02806(<)ER
272620.KPN_03289(PF00345)ER
272620.KPN_00416(>)ER
272620.KPN_00564(>)(mitochondrial)
272620.KPN_01164(<)mitochondrial
272620.KPN_01908+mitochondrial
272620.KPN_01345+ER
272620.KPN_02124(>)ER
272620.KPN_04087+mitochondrial
272620.KPN_04573+ER
272620.KPN_04669+(mitochondrial)
272620.KPN_04060+mitochondrial; (mitochondrial)
272620.KPN_00757+ER
272620.KPN_04472(PF00345)ER
272620.KPN_00521+ER
272620.KPN_01758+ER
272620.KPN_01027(PF00328)(ER)
272620.KPN_02135+ER
272620.KPN_03406(PF00345)ER
272620.KPN_03402++(PF00345)
272620.KPN_00501(PF00854)ER
272620.KPN_00213+(mitochondrial); mitochondrial
272620.KPN_04468(>)mitochondrial
272620.KPN_02454+mitochondrial; (mitochondrial)
272620.KPN_03271(>)(ER)
272620.KPN_03301(PF00854)ER
272620.KPN_04681(>)(ER); (plastid)
272620.KPN_01794+(ER); ER
272620.KPN_01648+ER
272620.KPN_02064+ER
272620.KPN_03785+ER
272620.KPN_03934(+)+(mitochondrial); (plastid)
272620.KPN_01014(>)ER
272620.KPN_01490+(mitochondrial)
272620.KPN_04093+(mitochondrial)
272620.KPN_04333+ER
272620.KPN_00319(>)ER
272620.KPN_04541(PF00345)ER; (ER)
272620.KPN_01668+(mitochondrial); plastid
272620.KPN_02795(PF10662)(mitochondrial)
272620.KPN_00269+(ER)
272620.KPN_01683(>)ER
272620.KPN_03221(PF10662)mitochondrial
272620.KPN_03256(>)ER
272620.KPN_00492(PF00345)ER
272620.KPN_00493(PF00577)ER
272620.KPN_02412+ER
272620.KPN_04487(>)ER
272620.KPN_01671(PF00577)ER; (ER)
272620.KPN_01672(PF00345)ER
272620.KPN_02323+ER
272620.KPN_00488(>)ER
272620.KPN_02404(PF03222)ER
272620.KPN_02970+ER
272620.KPN_03278(PF00345)ER
272620.KPN_03977+(mitochondrial)
272620.KPN_00479(<)ER
272620.KPN_00271+ER
272620.KPN_00276(PF00345)ER
272620.KPN_03805(>)ER
272620.KPN_00295(PF00345)ER
272620.KPN_00297(+)(>)(ER)
272620.KPN_00720(+)(PF00854)ER; (ER)
272620.KPN_00050(<)ER
272620.KPN_01310+ER
272620.KPN_01848+ER
272620.KPN_01231+ER
272620.KPN_01525+ER
272620.KPN_02345(>)ER
272620.KPN_02988(PF00577)ER
272620.KPN_02989(PF00345)ER
272620.KPN_02985(PF00345)ER
272620.KPN_01995(>)ER
272620.KPN_03569(PF03222)ER; (ER)
272620.KPN_00265(PF00345)ER
272620.KPN_00264(PF00577)ER
272620.KPN_00262(PF00345)ER
272620.KPN_03811(>)ER
272620.KPN_01080(>)mitochondrial; (mitochondrial)
272620.KPN_04510(>)ER
272620.KPN_02998+(mitochondrial)
272620.KPN_02772+ER
272620.KPN_03178+ER
272620.KPN_02380++
272620.KPN_02706+(mitochondrial)
272620.KPN_03127(+)(mitochondrial)
272620.KPN_03383+(>)
272620.KPN_01407(+)ER; (ER)
272620.KPN_00941+(ER)
272620.KPN_00421(+)(mitochondrial)
272620.KPN_00884++
272620.KPN_01996+(mitochondrial)
272620.KPN_02524(+)(mitochondrial)
272620.KPN_02362+plastid
272620.KPN_02152(+)(mitochondrial)
272620.KPN_03513+(>)
272620.KPN_04572++
272620.KPN_03861(PF00854)(ER)
272620.KPN_00343(>)(plastid)
272620.KPN_04715(+)(mitochondrial)
272620.KPN_03290(PF00577)(mitochondrial)
272620.KPN_04551+(mitochondrial)
272620.KPN_04138(<)+
272620.KPN_03261(+)(mitochondrial)
272620.KPN_04451(+)ER
272620.KPN_04867+(plastid)
272620.KPN_01635+(plastid)
272620.KPN_01812(+)ER; (ER)
272620.KPN_04191+(>)
272620.KPN_02665+(plastid)
272620.KPN_01755(+)(ER); ER
272620.KPN_00233(+)ER
272620.KPN_04039+(plastid)
272620.KPN_01120(+)(mitochondrial)
272620.KPN_03517(+)(ER); ER
272620.KPN_02476++
272620.KPN_02096+(plastid)
272620.KPN_03430+(ER)
272620.KPN_00313(+)(ER)
272620.KPN_03905(+)(ER)
272620.KPN_04540(PF00577)(mitochondrial)
272620.KPN_01460(+)ER
272620.KPN_00494++
272620.KPN_00103(<)(mitochondrial)
272620.KPN_03697+(mitochondrial)
272620.KPN_00489+(>)
272620.KPN_04255(+)mitochondrial
272620.KPN_04585++
272620.KPN_00619+(mitochondrial)
272620.KPN_00643+(plastid)
272620.KPN_02506(PF05704)(mitochondrial)
272620.KPN_02504(<)(mitochondrial)
272620.KPN_02294+(PF03222)
272620.KPN_02183+(plastid)
272620.KPN_03741+(>)
272620.KPN_02983(+)mitochondrial
272620.KPN_02986(PF00577)(ER)
272620.KPN_01923(<)ER; not used
272620.KPN_00919(+)(ER); (mitochondrial)
272620.KPN_03020(+)(ER); ER
272620.KPN_00709+
272620.KPN_01437+
272620.KPN_04246+
272620.KPN_01546(PF05681)
272620.KPN_01898+
272620.KPN_03495(<)
272620.KPN_03490+
272620.KPN_03009+
272620.KPN_02705+
272620.KPN_02947+
272620.KPN_03272(>)
272620.KPN_02508(>)
272620.KPN_01390+
272620.KPN_01158+not used
272620.KPN_01408(<)
272620.KPN_02572(PF13518)
272620.KPN_01714(PF13518)
272620.KPN_02312+
272620.KPN_03113+
272620.KPN_03531(>)
272620.KPN_02193+
272620.KPN_03442(+)(mitochondrial)
272620.KPN_00360(>)
272620.KPN_00760+
272620.KPN_00756+
272620.KPN_00162+
272620.KPN_00163+
272620.KPN_01382+
272620.KPN_01149(PF10685)
272620.KPN_04413+
272620.KPN_01700(PF00834)
272620.KPN_01705+
272620.KPN_02810+
272620.KPN_02929(+)+
272620.KPN_03450(+)(mitochondrial)
272620.KPN_00559+
272620.KPN_00774+
272620.KPN_00770+
272620.KPN_02167(<)
272620.KPN_00170+
272620.KPN_03911+
272620.KPN_03730+
272620.KPN_01593+
272620.KPN_01822+
272620.KPN_02800(+)plastid
272620.KPN_02931+
272620.KPN_00391+
272620.KPN_02027(+)(plastid)
272620.KPN_00392+
272620.KPN_00964(+)(PF03222)
272620.KPN_01318+
272620.KPN_00569(+)+
272620.KPN_04670+
272620.KPN_00744+
272620.KPN_04079(>)
272620.KPN_04719+
272620.KPN_04710+
272620.KPN_00180+
272620.KPN_02862(>)
272620.KPN_00086+
272620.KPN_04883+
272620.KPN_01768+
272620.KPN_03614+
272620.KPN_02839+
272620.KPN_02831+
272620.KPN_03051(<)
272620.KPN_03874+
272620.KPN_04473(PF00577)
272620.KPN_02224+
272620.KPN_01021(<)
272620.KPN_01803+
272620.KPN_02595+
272620.KPN_04823+
272620.KPN_02041(+)(mitochondrial)
272620.KPN_04276(>)
272620.KPN_04270+
272620.KPN_04124+
272620.KPN_03401(PF00577)
272620.KPN_03403(PF00345)
272620.KPN_04698(<)
272620.KPN_04699+
272620.KPN_04696(+)(mitochondrial)
272620.KPN_04053+
272620.KPN_01472+
272620.KPN_04869+
272620.KPN_04864+
272620.KPN_01744(PF00834)
272620.KPN_01030(PF10685)not used
272620.KPN_01034+
272620.KPN_01057(+)+
272620.KPN_01323+
272620.KPN_01322+
272620.KPN_01630+
272620.KPN_03670+
272620.KPN_01819+
272620.KPN_02213(<)
272620.KPN_03277(PF00577)
272620.KPN_03077(+)(plastid)
272620.KPN_03410+
272620.KPN_02486+
272620.KPN_02485+
272620.KPN_02483(>)
272620.KPN_03897+
272620.KPN_03302(PF00854)
272620.KPN_00512+
272620.KPN_04683(>)
272620.KPN_01595+
272620.KPN_00023+
272620.KPN_04450+
272620.KPN_00638+
272620.KPN_04521(PF13518)
272620.KPN_02684+
272620.KPN_01790+
272620.KPN_02638+
272620.KPN_01487+
272620.KPN_03640(PF05681)
272620.KPN_04438+
272620.KPN_03426(>)
272620.KPN_04326+
272620.KPN_04430+
272620.KPN_03336(PF13518)
272620.KPN_01401+
272620.KPN_00529+
272620.KPN_00522+not used
272620.KPN_03931+
272620.KPN_03933+
272620.KPN_02591(<)
272620.KPN_02846+
272620.KPN_00230+
272620.KPN_00309+
272620.KPN_01516(PF05681)
272620.KPN_03511+
272620.KPN_01013+
272620.KPN_04840(<)
272620.KPN_02478+
272620.KPN_02472(+)(ER)
272620.KPN_03655+
272620.KPN_01875+
272620.KPN_04264+
272620.KPN_02273+
272620.KPN_04092+
272620.KPN_03787(+)(plastid)
272620.KPN_03991+
272620.KPN_02894(>)
272620.KPN_04465+
272620.KPN_01104+
272620.KPN_00829+
272620.KPN_03925(<)
272620.KPN_00225+
272620.KPN_04024(+)(plastid)
272620.KPN_00316+
272620.KPN_04544+
272620.KPN_03218(>)
272620.KPN_02462+
272620.KPN_01666+
272620.KPN_01841(PF10685)
272620.KPN_03139+
272620.KPN_03130+
272620.KPN_00810(<)
272620.KPN_04013+
272620.KPN_04015(>)
272620.KPN_00075(>)
272620.KPN_00987+
272620.KPN_01678(+)(ER)
272620.KPN_01675+
272620.KPN_02500(>)
272620.KPN_01696+
272620.KPN_02258+
272620.KPN_02349(+)plastid
272620.KPN_01088(+)+
272620.KPN_03201+
272620.KPN_04226+
272620.KPN_03346+
272620.KPN_03901(PF13518)
272620.KPN_03906+
272620.KPN_01515(<)
272620.KPN_00965+
272620.KPN_04173+
272620.KPN_04174+
272620.KPN_00537+
272620.KPN_00531(+)+
272620.KPN_00790+
272620.KPN_01881(<)
272620.KPN_02605+
272620.KPN_02994(+)(plastid)
272620.KPN_02868(+)(plastid)
272620.KPN_04580+
272620.KPN_02246+
272620.KPN_00549+
272620.KPN_04763(+)(plastid)
272620.KPN_01532+
272620.KPN_03757(PF00834)
272620.KPN_03112+
272620.KPN_03111+
272620.KPN_03577(<)
272620.KPN_03974+
272620.KPN_03971(<)
272620.KPN_00585+
272620.KPN_00583+
272620.KPN_00470+
272620.KPN_03177+
272620.KPN_00277(PF00577)
272620.KPN_03801+
272620.KPN_03804+
272620.KPN_04618+
272620.KPN_01054+
272620.KPN_00645+
272620.KPN_00761(PF05681)
272620.KPN_02318+
272620.KPN_03555+
272620.KPN_04595+not used
272620.KPN_04599+
272620.KPN_04598+not used
272620.KPN_01236+
272620.KPN_03589+
272620.KPN_03581+
272620.KPN_03215+
272620.KPN_02619+
272620.KPN_02760+
272620.KPN_02968(<)
272620.KPN_01614+
272620.KPN_00460+
272620.KPN_00281(>)
272620.KPN_00280(>)
272620.KPN_00286+
272620.KPN_03890+
272620.KPN_04113+
272620.KPN_00732+
272620.KPN_00097+
272620.KPN_04608(>)
272620.KPN_01067+
272620.KPN_00094+
272620.KPN_01061+
272620.KPN_01427+
272620.KPN_01086+
272620.KPN_01732+
272620.KPN_01553(+)(plastid)
272620.KPN_03779(+)(mitochondrial)
272620.KPN_02608(+)+
272620.KPN_03488+
272620.KPN_02972+
272620.KPN_03556+
272620.KPN_03554+
272620.KPN_00458+
272620.KPN_00451+
272620.KPN_03823(+)(PF03222)
272620.KPN_02873(+)
272620.KPN_04752(+)
272620.KPN_04499(+)
272620.KPN_04245(+)
272620.KPN_01729(+)
272620.KPN_01947(+)
272620.KPN_01948(+)
272620.KPN_01541(+)
272620.KPN_03493(+)
272620.KPN_02700(+)
272620.KPN_03162(+)
272620.KPN_03168(+)
272620.KPN_02941(+)
272620.KPN_02010(+)
272620.KPN_00936(+)
272620.KPN_02148(+)
272620.KPN_02149(+)
272620.KPN_03835(+)
272620.KPN_00627(+)
272620.KPN_00621(+)
272620.KPN_03001(+)
272620.KPN_04622(+)
272620.KPN_04624(+)
272620.KPN_03713(+)
272620.KPN_01572(+)
272620.KPN_03533(+)
272620.KPN_00434(+)
272620.KPN_00545(+)
272620.KPN_00547(+)
272620.KPN_04651(+)
272620.KPN_01419(+)
272620.KPN_01141(+)
272620.KPN_02543(+)
272620.KPN_02449(+)
272620.KPN_01562(+)
272620.KPN_00055(+)
272620.KPN_03631(+)
272620.KPN_03527(+)
272620.KPN_00954(+)
272620.KPN_03457(+)
272620.KPN_00424(+)
272620.KPN_03856(+)
272620.KPN_00883(+)
272620.KPN_00554(+)
272620.KPN_00398(+)
272620.KPN_01233(+)
272620.KPN_00396(+)
272620.KPN_04395(+)
272620.KPN_03548+
272620.KPN_00772(+)
272620.KPN_02160(+)
272620.KPN_04708(+)
272620.KPN_04702(+)
272620.KPN_04703(+)
272620.KPN_02444(+)
272620.KPN_01175(+)
272620.KPN_01283(+)
272620.KPN_01358(+)
272620.KPN_02730(+)
272620.KPN_00966(+)
272620.KPN_03243(+)
272620.KPN_03865(+)
272620.KPN_04671(+)
272620.KPN_00347(+)
272620.KPN_00348(+)
272620.KPN_04508(+)
272620.KPN_02046(+)
272620.KPN_01762(+)
272620.KPN_01349(+)
272620.KPN_02122(+)
272620.KPN_03612(+)
272620.KPN_04086(+)
272620.KPN_00409(+)
272620.KPN_03984(+)
272620.KPN_04661(+)
272620.KPN_00996(+)
272620.KPN_00994(+)
272620.KPN_01072(+)
272620.KPN_00191(+)
272620.KPN_04478(+)
272620.KPN_01508(+)
272620.KPN_02221(+)
272620.KPN_01025(+)
272620.KPN_04139(+)
272620.KPN_02138(+)
272620.KPN_03669(+)
272620.KPN_02917(+)
272620.KPN_03069(+)
272620.KPN_03086(+)
272620.KPN_03088(+)
272620.KPN_00906(+)
272620.KPN_03405(+)
272620.KPN_04189(+)
272620.KPN_03311(+)
272620.KPN_04694(+)
272620.KPN_04052(+)
272620.KPN_00037(+)
272620.KPN_02967(+)
272620.KPN_01036(+)
272620.KPN_01634(+)
272620.KPN_01258(+)
272620.KPN_02676(+)
272620.KPN_02855(+)
272620.KPN_03419(+)
272620.KPN_03418(+)
272620.KPN_01351(+)
272620.KPN_00680(+)
272620.KPN_03303(+)
272620.KPN_03308(+)
272620.KPN_00335(+)
272620.KPN_04049(+)
272620.KPN_04043(+)
272620.KPN_00026(+)
272620.KPN_04456(+)
272620.KPN_01137(+)
272620.KPN_01480(+)
272620.KPN_01866(+)
272620.KPN_01263(+)
272620.KPN_01750(+)
272620.KPN_03339(+)
272620.KPN_01017(+)
272620.KPN_04843(+)
272620.KPN_04845(+)
272620.KPN_02164(+)
272620.KPN_01492(+)
272620.KPN_01499(+)
272620.KPN_01657(+)
272620.KPN_02785(+)
272620.KPN_01651(+)
272620.KPN_02783(+)
272620.KPN_01309(+)
272620.KPN_01272(+)
272620.KPN_04338(+)
272620.KPN_03326(+)
272620.KPN_00825(+)
272620.KPN_00417(+)
272620.KPN_00227(+)
272620.KPN_02272(+)
272620.KPN_04405(+)
272620.KPN_02350(+)
272620.KPN_04495(+)
272620.KPN_01463(+)
272620.KPN_02600(+)
272620.KPN_02649(+)
272620.KPN_03220(+)
272620.KPN_04239(+)
272620.KPN_00811(+)
272620.KPN_00073(+)
272620.KPN_04160(+)
272620.KPN_04829(+)
272620.KPN_01479(+)
272620.KPN_04484(+)
272620.KPN_01692(+)
272620.KPN_02252(+)
272620.KPN_00114(+)
272620.KPN_03695(+)
272620.KPN_00800(+)
272620.KPN_00187(+)
272620.KPN_03345(+)
272620.KPN_03907(+)
272620.KPN_00068(+)
272620.KPN_02769(+)
272620.KPN_04564(+)
272620.KPN_00792(+)
272620.KPN_00795(+)
272620.KPN_00796(+)
272620.KPN_02403(+)
272620.KPN_01998(+)
272620.KPN_02625(+)
272620.KPN_02624(+)
272620.KPN_02338(+)
272620.KPN_03119(+)
272620.KPN_03370(+)
272620.KPN_00478(+)
272620.KPN_00471(+)
272620.KPN_03079(+)
272620.KPN_00721(+)
272620.KPN_00647(+)
272620.KPN_04772(+)
272620.KPN_01455(+)
272620.KPN_01454(+)
272620.KPN_00793(+)
272620.KPN_03559(+)
272620.KPN_02184(+)
272620.KPN_04787(+)
272620.KPN_00866(+)
272620.KPN_03568(+)
272620.KPN_02539(+)
272620.KPN_02903(+)
272620.KPN_00267(+)not used
272620.KPN_00735(+)
272620.KPN_01589(+)
272620.KPN_01084(+)
272620.KPN_03176(+)
272620.KPN_04515(+)not used
272620.KPN_02974(+)
272620.KPN_04291(+)
272620.KPN_04129(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.1 (1/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================