Effective results for Rhodobacter sphaeroides 2.4.1 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 22 proteins (2 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
272943.RSP_0290(PF03209)mitochondrial; (ER)
272943.RSP_0278(PF03209)ER
272943.RSP_1647(PF01343)ER
272943.RSP_2392(PF07298)ER
272943.RSP_3650(PF01343)ER
272943.RSP_3627(PF01343)(ER)
272943.RSP_1375PF00777mitochondrial
272943.RSP_0971(PF07298)ER
272943.RSP_2050(PF13539)(ER)
272943.RSP_3491(PF13539)ER
272943.RSP_0318(PF07298)(ER)
272943.RSP_3784(PF01343)(ER)
272943.RSP_2744PF00777mitochondrial
272943.RSP_1076(PF01343)
272943.RSP_3246(PF07930)
272943.RSP_1626(PF13539)
272943.RSP_0230(PF10462)
272943.RSP_3617(PF13539)
272943.RSP_3636(PF13539)
272943.RSP_3793(PF14216)
272943.RSP_0315(PF03209)
272943.RSP_3760(PF13539)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.5 (12/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================