Effective results for Bartonella quintana str. Toulouse (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 49
- Predicted by EffectiveELD: 2 eukaryotic-like domains, contained in 2 proteins (0 high, 2 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
283165.BQ10560+ER
283165.BQ13060+(ER)
283165.BQ12990+ER
283165.BQ04740+ER
283165.BQ01530+ER
283165.BQ07970+ER
283165.BQ13290+ER
283165.BQ11030+mitochondrial; (mitochondrial)
283165.BQ02450+ER
283165.BQ06580+(mitochondrial)
283165.BQ10180+(ER)
283165.BQ12080+(ER); ER
283165.BQ09510+(mitochondrial)
283165.BQ08920+(mitochondrial)
283165.BQ11750+ER
283165.BQ05750(PF06455)ER
283165.BQ12470+ER
283165.BQ03160+ER
283165.BQ12150+
283165.BQ08760+
283165.BQ02470+
283165.BQ11580+
283165.BQ05870+
283165.BQ06610+
283165.BQ05330(PF01442)
283165.BQ05500+
283165.BQ01540+
283165.BQ07040+
283165.BQ11720+
283165.BQ01320+
283165.BQ08800+
283165.BQ07520+
283165.BQ09770+
283165.BQ10140+
283165.BQ12130+
283165.BQ05510+
283165.BQ03150+
283165.BQ01020+
283165.BQ00260+
283165.BQ04150+
283165.BQ05680+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.6 (16/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================