Effective results for Jannaschia sp. CCS1 (eggnog40)

Summary

Number of putative secreted proteins: 53
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 53 proteins (3 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
290400.Jann_0724				(PF07045)	ER
290400.Jann_3603				(PF11977)	ER
290400.Jann_0220				(PF13704)	mitochondrial
290400.Jann_2668				PF03815	ER
290400.Jann_0264				(PF14295)	ER
290400.Jann_0166				(PF03209)	(ER)
290400.Jann_2820				PF03815	mitochondrial
290400.Jann_2488				(PF16350)	(ER)
290400.Jann_2805				(PF16350)	ER; (ER)
290400.Jann_1583				(PF03209)	mitochondrial; (mitochondrial)
290400.Jann_1481				(PF16350)	(ER)
290400.Jann_4158				(PF09585)	(mitochondrial)
290400.Jann_0836				(PF13704)	(ER)
290400.Jann_0919				(PF16350)	(ER)
290400.Jann_1387				(PF06792)	(mitochondrial)
290400.Jann_0803				(PF08975)
290400.Jann_3702				(PF07366)
290400.Jann_2641				(PF07366)
290400.Jann_0221				(PF02485)
290400.Jann_1779				(PF01321)
290400.Jann_2672				PF11781
290400.Jann_3104				(PF07366)
290400.Jann_1988				(PF07045)
290400.Jann_2849				(PF16350)
290400.Jann_2206				(PF13430)
290400.Jann_2048				(PF01321)
290400.Jann_4086				(PF07366)
290400.Jann_1300				(PF07366)
290400.Jann_1051				(PF09458)
290400.Jann_1844				(PF10013)	not used
290400.Jann_0156				(PF03209)
290400.Jann_1446				(PF16952)
290400.Jann_1596				(PF16350)
290400.Jann_3506				(PF06792)
290400.Jann_2743				(PF01321)
290400.Jann_1105				(PF07366)
290400.Jann_1108				(PF07366)
290400.Jann_0850				(PF01321)
290400.Jann_1268				(PF07045)
290400.Jann_2612				(PF01321)
290400.Jann_3743				(PF07045)
290400.Jann_1678				(PF02485)
290400.Jann_3262				(PF13704)
290400.Jann_3268				(PF13704)
290400.Jann_3269				(PF13704)
290400.Jann_4159				(PF09585)
290400.Jann_4151				(PF01321)
290400.Jann_2638				(PF07366)
290400.Jann_1829				(PF01321)
290400.Jann_3270				(PF13704)
290400.Jann_4124				(PF01321)
290400.Jann_2621				(PF07045)
290400.Jann_1823				(PF13430)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================