Effective results for Wolbachia endosymbiont strain TRS of Brugia malayi (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 45
- Predicted by EffectiveELD: 1 eukaryotic-like domains, contained in 1 proteins (0 high, 1 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
292805.Wbm0748+(mitochondrial)
292805.Wbm0623(PF06455)ER
292805.Wbm0315+ER; (ER)
292805.Wbm0457+ER
292805.Wbm0769+ER
292805.Wbm0268+ER
292805.Wbm0502+(mitochondrial)
292805.Wbm0341+mitochondrial; ER
292805.Wbm0077+(mitochondrial)
292805.Wbm0591+ER
292805.Wbm0283+(ER); ER
292805.Wbm0542+ER
292805.Wbm0113+(mitochondrial)
292805.Wbm0207+(ER)
292805.Wbm0215+
292805.Wbm0405+
292805.Wbm0773+
292805.Wbm0174+
292805.Wbm0409+
292805.Wbm0587+
292805.Wbm0222+
292805.Wbm0638+
292805.Wbm0068+
292805.Wbm0463+
292805.Wbm0305+
292805.Wbm0110+
292805.Wbm0726+
292805.Wbm0484+
292805.Wbm0576+
292805.Wbm0199+
292805.Wbm0538+
292805.Wbm0080+
292805.Wbm0429+
292805.Wbm0144+
292805.Wbm0447+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.2 (12/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================