Effective results for Polaromonas sp. JS666 (eggnog40)

Summary

Number of putative secreted proteins: 69
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 69 proteins (1 high, 68 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
296591.Bpro_0035(PF03480)(mitochondrial)
296591.Bpro_3107(PF03480)(mitochondrial)
296591.Bpro_0556(PF03480)ER
296591.Bpro_2896(PF04654)ER
296591.Bpro_4499(PF03480)ER
296591.Bpro_1780(PF03480)ER
296591.Bpro_1006(PF01177)mitochondrial; (mitochondrial)
296591.Bpro_2208(PF03480)mitochondrial
296591.Bpro_2119(PF01177)(mitochondrial); plastid
296591.Bpro_1871(PF03480)ER
296591.Bpro_1290(PF03480)ER
296591.Bpro_3964(PF03480)ER
296591.Bpro_2963(PF03480)(ER); ER
296591.Bpro_4736(PF03480)ER
296591.Bpro_0088(PF03480)(ER)
296591.Bpro_0553(PF03480)(ER)
296591.Bpro_1455(PF03480)ER
296591.Bpro_2838(PF03480)ER
296591.Bpro_4882(PF03480)ER
296591.Bpro_2841(PF03480)mitochondrial; (mitochondrial)
296591.Bpro_4384(PF01177)ER; (ER)
296591.Bpro_2121(PF03480)mitochondrial
296591.Bpro_4848(PF04654)ER
296591.Bpro_1777(PF03480)ER
296591.Bpro_1748(PF03480)(ER)
296591.Bpro_1749(PF03480)(mitochondrial)
296591.Bpro_1750(PF03480)(mitochondrial)
296591.Bpro_0015PF08538plastid
296591.Bpro_2811(PF02201)(mitochondrial)
296591.Bpro_1964(PF07958)
296591.Bpro_1965(PF12471)
296591.Bpro_3050(PF04324)
296591.Bpro_4342(PF13510)
296591.Bpro_4051(PF03480)
296591.Bpro_4819(PF14031)
296591.Bpro_3276(PF04324)
296591.Bpro_3279(PF04324)
296591.Bpro_0661(PF14031)
296591.Bpro_0689(PF04324)
296591.Bpro_3944(PF13510)
296591.Bpro_4577(PF03480)
296591.Bpro_4755(PF01177)
296591.Bpro_3250(PF13510)
296591.Bpro_4374(PF04324)
296591.Bpro_4375(PF13510)
296591.Bpro_0690(PF13510)
296591.Bpro_0049(PF04324)
296591.Bpro_2805(PF13510)
296591.Bpro_1474(PF05189)
296591.Bpro_4817(PF14031)
296591.Bpro_0050(PF13510)
296591.Bpro_4424(PF13510)
296591.Bpro_4425(PF04324)
296591.Bpro_4341(PF04324)
296591.Bpro_0550(PF01177)
296591.Bpro_0552(PF01177)
296591.Bpro_2001(PF01177)
296591.Bpro_3943(PF04324)
296591.Bpro_4398(PF04324)
296591.Bpro_4399(PF13510)
296591.Bpro_4713(PF02201)
296591.Bpro_3705(PF08837)
296591.Bpro_1626(PF16155)
296591.Bpro_4092(PF14031)
296591.Bpro_4415(PF13510)
296591.Bpro_4414(PF04324)
296591.Bpro_2637(PF08837)
296591.Bpro_1774(PF03480)
296591.Bpro_2045(PF01177)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================