Effective results for Dokdonia sp. MED134 (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 43 proteins (5 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
313590.MED134_08871(PF02128) (PF00629)ER
313590.MED134_10675(PF16889)ER
313590.MED134_05329(PF06452)ER
313590.MED134_00680(PF04784)ER
313590.MED134_03809(PF16313)ER
313590.MED134_05964(PF16889)(mitochondrial)
313590.MED134_13166(PF00965)ER
313590.MED134_11796(PF16313)ER
313590.MED134_02880(PF10988)ER
313590.MED134_05019(PF10988)mitochondrial
313590.MED134_00715(PF10988)ER
313590.MED134_09231(PF10988)ER
313590.MED134_02875(PF10988)ER
313590.MED134_10166(PF02128)ER
313590.MED134_11205(PF02128)ER
313590.MED134_10710(PF14240)ER
313590.MED134_09351(PF03321)mitochondrial; (mitochondrial)
313590.MED134_00735(PF04784)ER
313590.MED134_04514(PF15902)ER
313590.MED134_04994(PF15902)ER
313590.MED134_07344(PF06452)ER
313590.MED134_02610(PF00629)ER
313590.MED134_14592(PF06452)ER
313590.MED134_05234(PF06452)ER
313590.MED134_08756(PF15902)ER
313590.MED134_02595(PF00629)ER
313590.MED134_14451(PF16313)ER
313590.MED134_00740(PF04784)ER
313590.MED134_10725(PF14240)ER
313590.MED134_10730PF00036ER
313590.MED134_00545(PF06452)ER
313590.MED134_02005(PF10988)ER
313590.MED134_07526(PF03321)(plastid)
313590.MED134_09881(PF10013)not used
313590.MED134_03544(PF01823)
313590.MED134_01305(PF03321)
313590.MED134_08016PF08695
313590.MED134_06454(PF07766)
313590.MED134_10221(PF10504)
313590.MED134_05544PF00036
313590.MED134_13651(PF03016)
313590.MED134_11436PF07492
313590.MED134_02495PF08695

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================