Effective results for Robiginitalea biformata HTCC2501 (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 61 proteins (2 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
313596.RB2501_12577(PF04389) PF04253ER
313596.RB2501_11637(PF15902)ER
313596.RB2501_06335(PF15902)ER
313596.RB2501_06750(PF03321)mitochondrial
313596.RB2501_03095(PF10988)ER
313596.RB2501_12562(PF07721)ER
313596.RB2501_13119(PF07632)ER
313596.RB2501_13489(PF11721)ER
313596.RB2501_05435(PF15902)ER
313596.RB2501_14204(PF04389) PF04253(ER)
313596.RB2501_01415(PF10571)mitochondrial
313596.RB2501_10257(PF02843)mitochondrial; (mitochondrial)
313596.RB2501_09650(PF04389)(ER); ER
313596.RB2501_05960(PF14329)(ER)
313596.RB2501_07010(PF04389)ER
313596.RB2501_13079(PF13415)(ER)
313596.RB2501_14084(PF04389)ER
313596.RB2501_00456(PF04389)ER
313596.RB2501_05360(PF15902)ER
313596.RB2501_05185(PF04389)ER
313596.RB2501_05210(PF04389)ER
313596.RB2501_04580(PF08022)mitochondrial; (mitochondrial)
313596.RB2501_12904(PF11721)ER
313596.RB2501_06520(PF07721)(ER)
313596.RB2501_11962(PF04389)ER
313596.RB2501_05195(PF15902)ER
313596.RB2501_12707(PF10988)ER
313596.RB2501_03680(PF10988)ER
313596.RB2501_12092(PF07632)ER
313596.RB2501_00576(PF15902)ER
313596.RB2501_10867(PF14329)(ER)
313596.RB2501_03340(PF03321)(ER)
313596.RB2501_14459(PF07721)(plastid)
313596.RB2501_10927(PF14329)(ER)
313596.RB2501_14134(PF13480)
313596.RB2501_14139(PF13480)
313596.RB2501_00761(PF10988)
313596.RB2501_14119(PF13480)
313596.RB2501_14114(PF13480)
313596.RB2501_15379(PF01227)
313596.RB2501_13334(PF13480)
313596.RB2501_13329(PF13480)
313596.RB2501_13324(PF13480)
313596.RB2501_02460(PF10013)
313596.RB2501_00636(PF07766)
313596.RB2501_03040(PF10988)
313596.RB2501_11227(PF04389)
313596.RB2501_14894(PF03321)
313596.RB2501_04615(PF08022)
313596.RB2501_12909(PF11721)
313596.RB2501_04585(PF01227)
313596.RB2501_10507(PF01227)
313596.RB2501_02775(PF01227)
313596.RB2501_14709(PF00070)
313596.RB2501_13559(PF13480)
313596.RB2501_06890(PF10988)
313596.RB2501_12702(PF10988)
313596.RB2501_06650(PF02843)
313596.RB2501_12844(PF15071)
313596.RB2501_14124(PF13480)
313596.RB2501_14129(PF13480)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================