Effective results for Shewanella putrefaciens CN-32 (eggnog40)

Summary

Number of putative secreted proteins: 648
- Predicted by EffectiveT3: 228 (high confidence), 252 (low confidence)
- Predicted by EffectiveCCBD: 24 within, 20 before, 48 behind expected region 25..70aa
- Predicted by T4SEpre: 105
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 22 proteins (3 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
319224.Sputcn32_1020		+	+		ER
319224.Sputcn32_2741		+			ER
319224.Sputcn32_2508		(>)	+		ER
319224.Sputcn32_1716			+		mitochondrial
319224.Sputcn32_0536	+			(PF16983)	(ER)
319224.Sputcn32_3388			+		ER
319224.Sputcn32_2386		+			ER
319224.Sputcn32_2097		(>)			(ER); (mitochondrial)
319224.Sputcn32_2465			+		ER
319224.Sputcn32_2466			+		ER
319224.Sputcn32_2467	+				(mitochondrial)
319224.Sputcn32_2469		(<)			(ER)
319224.Sputcn32_3392	+				(mitochondrial)
319224.Sputcn32_2604		(>)			ER
319224.Sputcn32_2116			+		ER
319224.Sputcn32_0731	+				(ER)
319224.Sputcn32_0603		+			ER
319224.Sputcn32_0287		+			ER
319224.Sputcn32_1321		+			ER
319224.Sputcn32_2078		(<)			ER
319224.Sputcn32_2850		(>)			(ER); (plastid)
319224.Sputcn32_0723		(<)			ER
319224.Sputcn32_3922				(PF13086)	(mitochondrial)
319224.Sputcn32_0502			+		ER
319224.Sputcn32_3087			+		ER
319224.Sputcn32_0592			+		ER
319224.Sputcn32_0751			+		ER
319224.Sputcn32_2450	+				ER
319224.Sputcn32_3875		(<)			ER
319224.Sputcn32_2121			+		ER
319224.Sputcn32_1048	+				(mitochondrial); plastid
319224.Sputcn32_0962	+				(mitochondrial)
319224.Sputcn32_0873		+			mitochondrial
319224.Sputcn32_3266			+		ER
319224.Sputcn32_3461			+		ER
319224.Sputcn32_2934	+				(mitochondrial)
319224.Sputcn32_2334		(>)			ER
319224.Sputcn32_2337		(<)			ER
319224.Sputcn32_0886			+		ER
319224.Sputcn32_0768			+		ER
319224.Sputcn32_0953		(>)			ER
319224.Sputcn32_0793			+		ER
319224.Sputcn32_0847		(>)			ER
319224.Sputcn32_3712			+		ER
319224.Sputcn32_2818			+		mitochondrial
319224.Sputcn32_1213				(PF13386)	ER
319224.Sputcn32_1574	+				(mitochondrial); mitochondrial
319224.Sputcn32_3534		(>)			ER
319224.Sputcn32_2554			+		ER
319224.Sputcn32_0085			+		ER
319224.Sputcn32_2314				(PF09127)	ER
319224.Sputcn32_2770		(>)			ER
319224.Sputcn32_2172			+		ER
319224.Sputcn32_1558		+			(ER)
319224.Sputcn32_1554		+			(ER)
319224.Sputcn32_2591		(>)			ER
319224.Sputcn32_3833				(PF13386)	ER
319224.Sputcn32_1883		(<)			ER
319224.Sputcn32_2767		+			ER
319224.Sputcn32_1307	+				(mitochondrial); (plastid)
319224.Sputcn32_0925		+			ER
319224.Sputcn32_3015			+		ER
319224.Sputcn32_0939			+		ER
319224.Sputcn32_1952				(PF13386)	ER; (ER)
319224.Sputcn32_0910		(>)			ER
319224.Sputcn32_0863	+				ER; (ER)
319224.Sputcn32_2693	+				ER; (ER)
319224.Sputcn32_2985			+		ER
319224.Sputcn32_2989		(<)			mitochondrial
319224.Sputcn32_1435	+				ER
319224.Sputcn32_1982			+		ER
319224.Sputcn32_1303			+		ER
319224.Sputcn32_1610	(+)		+		(ER)
319224.Sputcn32_1611		(>)			ER
319224.Sputcn32_0271			+		(mitochondrial)
319224.Sputcn32_0673		(>)			ER; (ER)
319224.Sputcn32_0672			+		ER
319224.Sputcn32_3572				(PF09346)	(ER)
319224.Sputcn32_1510			+		ER
319224.Sputcn32_1604		(>)			ER
319224.Sputcn32_1607			+		ER
319224.Sputcn32_2959		(>)			(mitochondrial)
319224.Sputcn32_2223		+			ER
319224.Sputcn32_3122	+		+		(plastid)
319224.Sputcn32_1074			+		ER; (ER)
319224.Sputcn32_0813				(PF05684)	ER
319224.Sputcn32_1703		(>)			ER
319224.Sputcn32_0251			+		ER
319224.Sputcn32_1841			+		ER
319224.Sputcn32_1663	+				ER
319224.Sputcn32_3727	+				(plastid)
319224.Sputcn32_3657	+	(>)
319224.Sputcn32_1474	(+)				(mitochondrial); plastid
319224.Sputcn32_3429		(<)			(mitochondrial)
319224.Sputcn32_2117	+				(mitochondrial)
319224.Sputcn32_1461	+	(>)
319224.Sputcn32_0604	(+)				ER
319224.Sputcn32_2979			+		(ER)
319224.Sputcn32_2471			+		(ER)
319224.Sputcn32_2103	+				(mitochondrial)
319224.Sputcn32_1101	(+)				(ER)
319224.Sputcn32_1037	(+)				ER
319224.Sputcn32_1803		(>)			plastid
319224.Sputcn32_2916	+	(>)
319224.Sputcn32_2826	(+)				(mitochondrial)
319224.Sputcn32_0754	(+)				(mitochondrial); (plastid)
319224.Sputcn32_0575		(<)			(mitochondrial)
319224.Sputcn32_3278	+		+
319224.Sputcn32_2587	+				(mitochondrial)
319224.Sputcn32_2586	+				plastid
319224.Sputcn32_2585	+				plastid
319224.Sputcn32_2903	+		+
319224.Sputcn32_2349	+				(plastid)
319224.Sputcn32_3465	+				(plastid)
319224.Sputcn32_1120	+		+
319224.Sputcn32_0883	(+)				mitochondrial
319224.Sputcn32_1591	+		+
319224.Sputcn32_3853	+				(ER)
319224.Sputcn32_3457	+		+
319224.Sputcn32_3038	(+)				(mitochondrial)
319224.Sputcn32_2495	(+)				ER
319224.Sputcn32_2810	(+)	(>)			(mitochondrial)
319224.Sputcn32_2812	+	+
319224.Sputcn32_2816	+				plastid
319224.Sputcn32_1216				PF03917 PF03199
319224.Sputcn32_2140			+		(mitochondrial)
319224.Sputcn32_3129	+				(plastid)
319224.Sputcn32_0786	+				(ER)
319224.Sputcn32_0437	(+)				(mitochondrial); (plastid)
319224.Sputcn32_2599		(>)	+
319224.Sputcn32_3841	(+)				(mitochondrial)
319224.Sputcn32_3157	(+)				ER
319224.Sputcn32_1374	(+)				mitochondrial
319224.Sputcn32_0449	+	(>)
319224.Sputcn32_2962	(+)				(ER)
319224.Sputcn32_1419	(+)				(mitochondrial)
319224.Sputcn32_1300	+		+
319224.Sputcn32_1638	+				(plastid)
319224.Sputcn32_3789	(+)				mitochondrial; plastid
319224.Sputcn32_0057	+				(mitochondrial)
319224.Sputcn32_3824				PF03917 PF03199
319224.Sputcn32_1315	+				(plastid)
319224.Sputcn32_0049	+				plastid
319224.Sputcn32_0463	(+)				(mitochondrial)
319224.Sputcn32_2762	(+)				(mitochondrial)
319224.Sputcn32_2969		(>)	+
319224.Sputcn32_2982	+	+
319224.Sputcn32_1051	(+)				(mitochondrial)
319224.Sputcn32_0276	(+)				(mitochondrial)
319224.Sputcn32_0675	+				(mitochondrial)
319224.Sputcn32_1988			+		(ER)
319224.Sputcn32_0738	(+)				(mitochondrial)
319224.Sputcn32_2513	+				(ER)
319224.Sputcn32_0051	+				(ER)
319224.Sputcn32_2646			+		(ER)
319224.Sputcn32_2327	+	(>)
319224.Sputcn32_1511		+	+
319224.Sputcn32_0644	+				(plastid)
319224.Sputcn32_4003	+				(mitochondrial)
319224.Sputcn32_3181	(+)				ER
319224.Sputcn32_2506	(+)				(mitochondrial); plastid
319224.Sputcn32_1070	(+)				(ER)
319224.Sputcn32_2225	+				(ER)
319224.Sputcn32_2210	(+)				(mitochondrial)
319224.Sputcn32_0716	(+)				(mitochondrial)
319224.Sputcn32_1717	+
319224.Sputcn32_1715	(+)				(plastid)
319224.Sputcn32_2833		(>)
319224.Sputcn32_2710	(+)				(plastid)
319224.Sputcn32_3705		+
319224.Sputcn32_2412	+
319224.Sputcn32_0128	+
319224.Sputcn32_3920			+
319224.Sputcn32_2096	(+)	(<)
319224.Sputcn32_2099	+
319224.Sputcn32_2708	(+)				(plastid)
319224.Sputcn32_1874		+
319224.Sputcn32_1875			+
319224.Sputcn32_1277		+
319224.Sputcn32_1017		(>)
319224.Sputcn32_0389		+
319224.Sputcn32_1720	+
319224.Sputcn32_1721	+
319224.Sputcn32_2571	+
319224.Sputcn32_1043	+
319224.Sputcn32_0528			+
319224.Sputcn32_1164	+
319224.Sputcn32_2461	+
319224.Sputcn32_2463	+
319224.Sputcn32_1865			+
319224.Sputcn32_3078	+
319224.Sputcn32_1869	+
319224.Sputcn32_2265			+
319224.Sputcn32_2608	+
319224.Sputcn32_2601	+
319224.Sputcn32_1398	+
319224.Sputcn32_2111	+
319224.Sputcn32_1483		(>)
319224.Sputcn32_1640	+
319224.Sputcn32_1644			+
319224.Sputcn32_1648				PF01536
319224.Sputcn32_0608		(<)
319224.Sputcn32_0288	+
319224.Sputcn32_0519	(+)				(mitochondrial)
319224.Sputcn32_1888	+
319224.Sputcn32_3937			+
319224.Sputcn32_3090	+
319224.Sputcn32_3091			+
319224.Sputcn32_3259				(PF13086)
319224.Sputcn32_3709			+
319224.Sputcn32_3898	+
319224.Sputcn32_1817	+
319224.Sputcn32_3441	+
319224.Sputcn32_2295			+
319224.Sputcn32_1250	+
319224.Sputcn32_2617			+
319224.Sputcn32_1928	+
319224.Sputcn32_1924	+
319224.Sputcn32_1920	+
319224.Sputcn32_1922	+
319224.Sputcn32_2100	+
319224.Sputcn32_2109	+
319224.Sputcn32_1036		(>)
319224.Sputcn32_1745	+
319224.Sputcn32_0342	+
319224.Sputcn32_0341			+
319224.Sputcn32_0618	+
319224.Sputcn32_0292	+
319224.Sputcn32_3000			+
319224.Sputcn32_2001	+
319224.Sputcn32_3002	+
319224.Sputcn32_3244	(+)	(>)
319224.Sputcn32_2447	+
319224.Sputcn32_3408			+
319224.Sputcn32_3155	+
319224.Sputcn32_1936			+
319224.Sputcn32_0613	+
319224.Sputcn32_0343	+
319224.Sputcn32_1758	+
319224.Sputcn32_1752		(>)
319224.Sputcn32_1757	+
319224.Sputcn32_0759	(+)				(mitochondrial)
319224.Sputcn32_0574		(>)
319224.Sputcn32_0408	(+)				(ER)
319224.Sputcn32_2950		(<)
319224.Sputcn32_3470	+
319224.Sputcn32_3476	+
319224.Sputcn32_2717	(+)				(plastid)
319224.Sputcn32_1839	+
319224.Sputcn32_3983		(>)
319224.Sputcn32_3054	(+)				(plastid)
319224.Sputcn32_2584	+
319224.Sputcn32_2057	+
319224.Sputcn32_3690	+
319224.Sputcn32_3293		+
319224.Sputcn32_2880	+
319224.Sputcn32_1907	(+)		+
319224.Sputcn32_1045	+
319224.Sputcn32_1348	(+)				(plastid)
319224.Sputcn32_1349			+
319224.Sputcn32_2961	+
319224.Sputcn32_0187	+
319224.Sputcn32_1588	+
319224.Sputcn32_2963	+
319224.Sputcn32_3991			+
319224.Sputcn32_1567	+
319224.Sputcn32_1760	(+)				(ER)
319224.Sputcn32_0963	+
319224.Sputcn32_0415	+
319224.Sputcn32_0410	+
319224.Sputcn32_3867	+
319224.Sputcn32_3863		(>)
319224.Sputcn32_3861	+
319224.Sputcn32_3463	+
319224.Sputcn32_1822		(>)
319224.Sputcn32_1824	+
319224.Sputcn32_3040	+
319224.Sputcn32_3689	+
319224.Sputcn32_2027			+
319224.Sputcn32_1915		(>)
319224.Sputcn32_1916	+
319224.Sputcn32_1913	+
319224.Sputcn32_2935	+
319224.Sputcn32_2331	+
319224.Sputcn32_2801		+
319224.Sputcn32_1352	+
319224.Sputcn32_2809	(+)				(mitochondrial)
319224.Sputcn32_0884	+
319224.Sputcn32_0340	+
319224.Sputcn32_1575		(<)
319224.Sputcn32_0956	+				not used
319224.Sputcn32_2231	+
319224.Sputcn32_0631	+
319224.Sputcn32_0424	+
319224.Sputcn32_3216	(+)				(mitochondrial)
319224.Sputcn32_0840	+
319224.Sputcn32_2720	+
319224.Sputcn32_3458	+
319224.Sputcn32_3454			+
319224.Sputcn32_2158	+
319224.Sputcn32_3521	+
319224.Sputcn32_2324	+
319224.Sputcn32_2322	+
319224.Sputcn32_1214	+
319224.Sputcn32_0896	+
319224.Sputcn32_0161	+
319224.Sputcn32_1545	+
319224.Sputcn32_3337	+
319224.Sputcn32_3331		(<)			not used
319224.Sputcn32_0089			+
319224.Sputcn32_2596	(+)				(plastid)
319224.Sputcn32_3843		(>)
319224.Sputcn32_2555		(<)
319224.Sputcn32_2002	+
319224.Sputcn32_2319		(>)
319224.Sputcn32_1208			+
319224.Sputcn32_2955				(PF09346)
319224.Sputcn32_1203	+
319224.Sputcn32_0954	+
319224.Sputcn32_1157		(>)
319224.Sputcn32_0936	+
319224.Sputcn32_2958	+
319224.Sputcn32_1258	+
319224.Sputcn32_0208		(>)
319224.Sputcn32_0448	+
319224.Sputcn32_3354	+
319224.Sputcn32_3234	+
319224.Sputcn32_1787	+
319224.Sputcn32_2783	+
319224.Sputcn32_2785	+
319224.Sputcn32_2784	+
319224.Sputcn32_3496				(PF09346)
319224.Sputcn32_3495		(<)
319224.Sputcn32_2548	+
319224.Sputcn32_2541	+
319224.Sputcn32_2595	+
319224.Sputcn32_3444	+
319224.Sputcn32_3166		(>)
319224.Sputcn32_3168	+
319224.Sputcn32_2301			+
319224.Sputcn32_2303		(<)
319224.Sputcn32_2136	+
319224.Sputcn32_2766	(+)				(mitochondrial)
319224.Sputcn32_2765			+
319224.Sputcn32_2764				(PF13086)
319224.Sputcn32_2134	(+)				plastid
319224.Sputcn32_1418	(+)				(mitochondrial)
319224.Sputcn32_1305	+
319224.Sputcn32_3830	+
319224.Sputcn32_0920				(PF09346)
319224.Sputcn32_0924	+
319224.Sputcn32_3393	+
319224.Sputcn32_0858	+
319224.Sputcn32_3849	+
319224.Sputcn32_0456	+
319224.Sputcn32_0455	+
319224.Sputcn32_1506	+
319224.Sputcn32_3019	+
319224.Sputcn32_3466	(+)	+
319224.Sputcn32_1026	+
319224.Sputcn32_3957		(<)
319224.Sputcn32_3799	+
319224.Sputcn32_2574	+
319224.Sputcn32_2376	+
319224.Sputcn32_2060	(+)				(ER)
319224.Sputcn32_2976		(>)
319224.Sputcn32_1409	+
319224.Sputcn32_1401	+
319224.Sputcn32_1311	+
319224.Sputcn32_1083	(+)				(mitochondrial)
319224.Sputcn32_1082	+
319224.Sputcn32_1085			+
319224.Sputcn32_1084	+
319224.Sputcn32_1539	+
319224.Sputcn32_1533	+
319224.Sputcn32_0136	+
319224.Sputcn32_1623	+
319224.Sputcn32_0660	+
319224.Sputcn32_0661			+
319224.Sputcn32_2567	(+)				plastid
319224.Sputcn32_2563		(>)
319224.Sputcn32_2064	+
319224.Sputcn32_3969	+
319224.Sputcn32_3816				(PF05706)
319224.Sputcn32_2694	(+)		+
319224.Sputcn32_0264	+
319224.Sputcn32_3612		+
319224.Sputcn32_3619				(PF02732)
319224.Sputcn32_2187	+
319224.Sputcn32_2185	+
319224.Sputcn32_3451	+
319224.Sputcn32_2182	+
319224.Sputcn32_2181			+
319224.Sputcn32_1434	+
319224.Sputcn32_1324	+
319224.Sputcn32_1325	+
319224.Sputcn32_1323	+
319224.Sputcn32_0126	(+)				(ER)
319224.Sputcn32_0903	+
319224.Sputcn32_1619	+
319224.Sputcn32_0477		(<)
319224.Sputcn32_2129	(+)		+
319224.Sputcn32_1242		(>)
319224.Sputcn32_2517	+
319224.Sputcn32_3574		+
319224.Sputcn32_0147		(<)
319224.Sputcn32_3592	+
319224.Sputcn32_3118	+
319224.Sputcn32_3115				(PF09346)
319224.Sputcn32_3604			+
319224.Sputcn32_3601	+
319224.Sputcn32_1994	+
319224.Sputcn32_1634			+
319224.Sputcn32_1425		(>)
319224.Sputcn32_1196	+
319224.Sputcn32_1847	(+)				(plastid)
319224.Sputcn32_0808				(PF05684)
319224.Sputcn32_0802	+
319224.Sputcn32_0803				(PF09346)
319224.Sputcn32_2718	+
319224.Sputcn32_2719	+
319224.Sputcn32_0647	+
319224.Sputcn32_0216	+
319224.Sputcn32_2759	+
319224.Sputcn32_1368	+
319224.Sputcn32_1369	+
319224.Sputcn32_2149		(>)
319224.Sputcn32_3124	+
319224.Sputcn32_2435			+
319224.Sputcn32_2727	+
319224.Sputcn32_2726	+
319224.Sputcn32_1299	(+)			(PF09127)
319224.Sputcn32_1454	+
319224.Sputcn32_1679	+
319224.Sputcn32_3006	+
319224.Sputcn32_1837	(+)				(mitochondrial)
319224.Sputcn32_1448	+
319224.Sputcn32_3358	+
319224.Sputcn32_3506	+
319224.Sputcn32_1666			+
319224.Sputcn32_2425	+
319224.Sputcn32_2355	+
319224.Sputcn32_3916	+
319224.Sputcn32_3918			+
319224.Sputcn32_2402	+
319224.Sputcn32_2406	+
319224.Sputcn32_1786			+
319224.Sputcn32_1780	+
319224.Sputcn32_3626	+
319224.Sputcn32_2246	(+)	(>)
319224.Sputcn32_1447	+
319224.Sputcn32_1668	+
319224.Sputcn32_1662	+
319224.Sputcn32_1172	+
319224.Sputcn32_0007	(+)		+
319224.Sputcn32_2524	(+)
319224.Sputcn32_2415	(+)
319224.Sputcn32_1338	(+)
319224.Sputcn32_2384	(+)
319224.Sputcn32_2381	(+)
319224.Sputcn32_3652	(+)
319224.Sputcn32_1275	+
319224.Sputcn32_1273	(+)
319224.Sputcn32_1657	(+)
319224.Sputcn32_0526	(+)
319224.Sputcn32_3643	(+)
319224.Sputcn32_3646	(+)
319224.Sputcn32_2269	(+)
319224.Sputcn32_1269	(+)
319224.Sputcn32_2288	(+)
319224.Sputcn32_0369	(+)
319224.Sputcn32_2844	(+)
319224.Sputcn32_1481	(+)
319224.Sputcn32_3093	(+)
319224.Sputcn32_3893	(+)
319224.Sputcn32_3076	(+)
319224.Sputcn32_2074	(+)
319224.Sputcn32_2858	(+)
319224.Sputcn32_2854	(+)
319224.Sputcn32_3140	(+)
319224.Sputcn32_0031	(+)
319224.Sputcn32_0032	(+)
319224.Sputcn32_0034	(+)
319224.Sputcn32_0346	(+)
319224.Sputcn32_1073	(+)
319224.Sputcn32_3086	(+)
319224.Sputcn32_3718	(+)
319224.Sputcn32_3249	(+)
319224.Sputcn32_3061	(+)
319224.Sputcn32_3667	(+)
319224.Sputcn32_2915	(+)
319224.Sputcn32_1935	(+)
319224.Sputcn32_1933	(+)
319224.Sputcn32_1932	(+)
319224.Sputcn32_2829	(+)
319224.Sputcn32_1243	(+)
319224.Sputcn32_2700	(+)
319224.Sputcn32_0195	(+)
319224.Sputcn32_0590	(+)
319224.Sputcn32_0597	(+)
319224.Sputcn32_0595	(+)
319224.Sputcn32_0578	(+)
319224.Sputcn32_2451	(+)
319224.Sputcn32_2455	(+)
319224.Sputcn32_3988	(+)
319224.Sputcn32_3295	(+)
319224.Sputcn32_2909	(+)
319224.Sputcn32_2902	(+)
319224.Sputcn32_2630	(+)
319224.Sputcn32_0989	(+)
319224.Sputcn32_1564	(+)
319224.Sputcn32_1566	(+)
319224.Sputcn32_3783	(+)
319224.Sputcn32_0365	(+)
319224.Sputcn32_0743	(+)
319224.Sputcn32_0960	(+)
319224.Sputcn32_0969	(+)
319224.Sputcn32_0562	(+)
319224.Sputcn32_0564	(+)
319224.Sputcn32_0411	(+)
319224.Sputcn32_3513	(+)
319224.Sputcn32_3862	(+)
319224.Sputcn32_2342	(+)
319224.Sputcn32_1829	(+)
319224.Sputcn32_1122	(+)
319224.Sputcn32_2022	(+)
319224.Sputcn32_3685	(+)
319224.Sputcn32_2487	(+)
319224.Sputcn32_2713	(+)
319224.Sputcn32_0835	(+)
319224.Sputcn32_0176	(+)
319224.Sputcn32_1577	(+)
319224.Sputcn32_1576	(+)
319224.Sputcn32_1776	(+)
319224.Sputcn32_0229	(+)
319224.Sputcn32_2343	(+)
319224.Sputcn32_2155	(+)
319224.Sputcn32_3147	(+)
319224.Sputcn32_0063	(+)
319224.Sputcn32_2814	(+)
319224.Sputcn32_0163	(+)
319224.Sputcn32_0307	(+)
319224.Sputcn32_0788	(+)
319224.Sputcn32_0233	(+)
319224.Sputcn32_0231	(+)
319224.Sputcn32_0238	(+)
319224.Sputcn32_1174	(+)
319224.Sputcn32_3203	(+)
319224.Sputcn32_3206	(+)
319224.Sputcn32_3204	(+)
319224.Sputcn32_3209	(+)
319224.Sputcn32_2794	(+)
319224.Sputcn32_3023	(+)
319224.Sputcn32_1972	(+)
319224.Sputcn32_1974	(+)
319224.Sputcn32_1209	(+)
319224.Sputcn32_2173	(+)
319224.Sputcn32_0077	(+)
319224.Sputcn32_1373	(+)
319224.Sputcn32_0959	(+)
319224.Sputcn32_1799	(+)
319224.Sputcn32_0443	(+)
319224.Sputcn32_2621	(+)
319224.Sputcn32_3231	(+)
319224.Sputcn32_0221	(+)
319224.Sputcn32_2592	(+)
319224.Sputcn32_2594	(+)
319224.Sputcn32_3540	(+)
319224.Sputcn32_2760	(+)
319224.Sputcn32_1895	(+)
319224.Sputcn32_1896	(+)
319224.Sputcn32_1414	(+)
319224.Sputcn32_1415	(+)
319224.Sputcn32_1095	(+)
319224.Sputcn32_1098	(+)
319224.Sputcn32_1099	(+)
319224.Sputcn32_0217	(+)
319224.Sputcn32_0211	(+)
319224.Sputcn32_1642	(+)
319224.Sputcn32_1113	(+)
319224.Sputcn32_0129	(+)
319224.Sputcn32_3952	(+)
319224.Sputcn32_2579	(+)
319224.Sputcn32_3554	(+)
319224.Sputcn32_1959	(+)
319224.Sputcn32_1954	(+)
319224.Sputcn32_2393	(+)
319224.Sputcn32_2370	(+)
319224.Sputcn32_2975	(+)
319224.Sputcn32_1400	(+)
319224.Sputcn32_1531	(+)
319224.Sputcn32_0042	(+)
319224.Sputcn32_1627	(+)
319224.Sputcn32_1625	(+)
319224.Sputcn32_0861	(+)
319224.Sputcn32_2283	(+)
319224.Sputcn32_0870	(+)
319224.Sputcn32_3149	(+)
319224.Sputcn32_1239	(+)
319224.Sputcn32_3962	(+)
319224.Sputcn32_3589	(+)
319224.Sputcn32_3108	(+)
319224.Sputcn32_3109	(+)
319224.Sputcn32_1436	(+)
319224.Sputcn32_0050	(+)
319224.Sputcn32_0693	(+)
319224.Sputcn32_0676	(+)
319224.Sputcn32_0679	(+)
319224.Sputcn32_0588	(+)
319224.Sputcn32_1647	(+)
319224.Sputcn32_1130	(+)
319224.Sputcn32_3808	(+)
319224.Sputcn32_3774	(+)
319224.Sputcn32_3576	(+)
319224.Sputcn32_3972	(+)
319224.Sputcn32_3117	(+)
319224.Sputcn32_2325	(+)
319224.Sputcn32_1421	(+)
319224.Sputcn32_0322	(+)
319224.Sputcn32_1337	(+)
319224.Sputcn32_3298	(+)
319224.Sputcn32_3745	(+)
319224.Sputcn32_3801	(+)
319224.Sputcn32_1858	(+)
319224.Sputcn32_2232	(+)
319224.Sputcn32_1854	(+)
319224.Sputcn32_3772	(+)
319224.Sputcn32_2657	(+)
319224.Sputcn32_0107	(+)
319224.Sputcn32_1674	(+)
319224.Sputcn32_1836	(+)
319224.Sputcn32_0253	(+)
319224.Sputcn32_0628	(+)
319224.Sputcn32_0629	(+)
319224.Sputcn32_3056	(+)
319224.Sputcn32_3753	(+)
319224.Sputcn32_1680	(+)
319224.Sputcn32_2391	(+)
319224.Sputcn32_3625	(+)
319224.Sputcn32_0975	(+)
319224.Sputcn32_2663	(+)
319224.Sputcn32_0761	(+)
319224.Sputcn32_1061	(+)
319224.Sputcn32_0971	(+)
319224.Sputcn32_1444	(+)
319224.Sputcn32_2019	(+)
319224.Sputcn32_0710	(+)
319224.Sputcn32_0001	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.8 (8/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================