Effective results for Aster yellows witches-broom phytoplasma AYWB (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 41 proteins (17 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
322098.AYWB_219				PF08275 (PF13155)	ER; (ER)
322098.AYWB_573				(PF11074)	mitochondrial
322098.AYWB_389				PF03796	ER
322098.AYWB_178				PF08275 (PF13155)	(ER)
322098.AYWB_616				PF08275 (PF13155)
322098.AYWB_285				PF08275 (PF13155)
322098.AYWB_108				PF08275 (PF13155)
322098.AYWB_086				PF08275	(mitochondrial)
322098.AYWB_282				(PF02223)
322098.AYWB_378				(PF00436)
322098.AYWB_151				PF00799
322098.AYWB_150				(PF00436)
322098.AYWB_617				PF03796
322098.AYWB_533				(PF13246)
322098.AYWB_284				PF03796
322098.AYWB_193				(PF00436)
322098.AYWB_652				(PF01795)
322098.AYWB_653				(PF01795)
322098.AYWB_268				PF00799
322098.AYWB_492				(PF02223)
322098.AYWB_223				(PF09588)
322098.AYWB_222				(PF02223)
322098.AYWB_220				PF03796
322098.AYWB_381				(PF00436)
322098.AYWB_182				(PF09588)
322098.AYWB_181				(PF02223)
322098.AYWB_078				PF03796
322098.AYWB_077				PF03796
322098.AYWB_074				(PF02223)
322098.AYWB_179				PF03796
322098.AYWB_270				PF00799	not used
322098.AYWB_271				(PF00436)
322098.AYWB_007				PF03796
322098.AYWB_004				(PF00436)	not used
322098.AYWB_232				(PF00436)
322098.AYWB_048				(PF13155)
322098.AYWB_087				(PF13155)
322098.AYWB_018				(PF13246)
322098.AYWB_421				(PF09419)
322098.AYWB_209				(PF00436)	not used
322098.AYWB_113				(PF09588)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================