Effective results for Azotobacter vinelandii DJ (eggnog40)

Summary

Number of putative secreted proteins: 221
- Predicted by T4SEpre: 48
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 180 proteins (7 high, 173 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
322710.Avin_38410(PF02887) (PF00224)(mitochondrial)
322710.Avin_00350+ER
322710.Avin_49960(PF00121)(ER); (mitochondrial)
322710.Avin_21910(PF09084)ER
322710.Avin_32320(PF13565)mitochondrial; (mitochondrial)
322710.Avin_21640(PF09084)(ER)
322710.Avin_08170(PF09084)ER
322710.Avin_30580(PF01118)(mitochondrial)
322710.Avin_25520(PF01609)(mitochondrial)
322710.Avin_31400(PF09084)ER
322710.Avin_45770(PF00121)(ER); (mitochondrial)
322710.Avin_43890(PF08028)(mitochondrial)
322710.Avin_31360(PF09084)ER
322710.Avin_21720(PF09084)ER
322710.Avin_51840(PF00565)ER
322710.Avin_00430+ER
322710.Avin_40530(PF02371)(mitochondrial)
322710.Avin_28090(PF13358)(ER)
322710.Avin_47870(PF00565)ER
322710.Avin_32560+ER
322710.Avin_15600+ER
322710.Avin_43020+ER
322710.Avin_31680(PF09084)ER
322710.Avin_36640+ER
322710.Avin_02750(PF00148)(mitochondrial)
322710.Avin_21970(PF09084)ER
322710.Avin_41870(PF02371)(mitochondrial)
322710.Avin_19010(PF00565)ER
322710.Avin_14330+ER
322710.Avin_10850+ER
322710.Avin_46540+ER
322710.Avin_29390(PF09084)ER
322710.Avin_22500(PF09084)ER
322710.Avin_44550(PF09084)(mitochondrial)
322710.Avin_51570+ER
322710.Avin_30510(PF09084)ER
322710.Avin_31390(PF09084)ER
322710.Avin_48780(PF02371)mitochondrial
322710.Avin_26600+(ER); ER
322710.Avin_31380(PF09084)ER
322710.Avin_12104+ER
322710.Avin_22420(PF09084)ER
322710.Avin_08750(PF03928)(ER); (mitochondrial)
322710.Avin_22320(PF13518) (PF13683)
322710.Avin_25020+(mitochondrial)
322710.Avin_22210PF03952 PF00113
322710.Avin_52040+plastid
322710.Avin_00500(PF01583)(mitochondrial)
322710.Avin_16180(PF01583)(plastid)
322710.Avin_31350+(PF08028)
322710.Avin_27550+(plastid)
322710.Avin_49990(PF02887) (PF00224)
322710.Avin_24694(PF01583)plastid
322710.Avin_13810(PF08787)plastid
322710.Avin_09100(PF13518) (PF13683)
322710.Avin_33550(PF13518) (PF13683)
322710.Avin_23430+(mitochondrial)
322710.Avin_31560(PF13384)(mitochondrial)
322710.Avin_43370(PF02887) (PF00224)
322710.Avin_41930(PF01609)(plastid)
322710.Avin_38790PF03952 PF00113
322710.Avin_36480(PF13384)(mitochondrial)
322710.Avin_27240(PF02887) (PF00224)
322710.Avin_45960(PF01609)(ER)
322710.Avin_22190(PF02887) (PF00224)
322710.Avin_49970PF03952 PF00113
322710.Avin_31100(PF08028)(plastid)
322710.Avin_03760(PF09084)(ER)
322710.Avin_43350PF03952 PF00113
322710.Avin_09530(PF13384)(mitochondrial)
322710.Avin_50600(PF13518) (PF13683)
322710.Avin_45760PF03952 PF00113
322710.Avin_27220PF03952 PF00113
322710.Avin_11320(PF13518) (PF13683)
322710.Avin_15790(PF13518) (PF13683)
322710.Avin_15120(PF01118)(mitochondrial)
322710.Avin_38420+(ER)
322710.Avin_36420(PF13358) (PF13384)
322710.Avin_36130(PF13358)(mitochondrial)
322710.Avin_51360(PF02887) (PF00224)
322710.Avin_43300(PF03928)(mitochondrial)
322710.Avin_01470(PF00148)(plastid)
322710.Avin_21030(PF13518) (PF13683)
322710.Avin_49630(PF13384)(mitochondrial)
322710.Avin_52330+
322710.Avin_44660(PF02371)
322710.Avin_25480(PF13565)
322710.Avin_16430(PF05187)
322710.Avin_30220(PF13358)
322710.Avin_26840(PF01609)
322710.Avin_30820(PF03928)
322710.Avin_02590(PF00148)
322710.Avin_32180(PF08028)
322710.Avin_51250(PF12708)
322710.Avin_44670(PF13358)
322710.Avin_18110+
322710.Avin_33710(PF12708)
322710.Avin_37340+
322710.Avin_16510(PF13565)
322710.Avin_42410+
322710.Avin_41760+
322710.Avin_49770(PF01609)
322710.Avin_27180+
322710.Avin_32190(PF01609)
322710.Avin_32330(PF13358)
322710.Avin_18270(PF01609)
322710.Avin_46720(PF03928)
322710.Avin_44390(PF10685)
322710.Avin_24400+
322710.Avin_13540(PF13358)
322710.Avin_09560(PF02371)
322710.Avin_17150(PF13358)
322710.Avin_49710(PF13565)
322710.Avin_46040(PF01118)
322710.Avin_30780(PF13565)
322710.Avin_34250(PF01118)
322710.Avin_18390(PF02371)
322710.Avin_21940+
322710.Avin_51190(PF12708)
322710.Avin_20700(PF13565)
322710.Avin_51200(PF12708)
322710.Avin_45800(PF13358)
322710.Avin_23960(PF08787)
322710.Avin_08950(PF00565)
322710.Avin_34240(PF01118)
322710.Avin_49030(PF01106)
322710.Avin_02790(PF01106)
322710.Avin_13600(PF13565)
322710.Avin_02770(PF00148)
322710.Avin_40190+
322710.Avin_51180(PF12708)
322710.Avin_08220(PF05935)
322710.Avin_13510(PF13565)
322710.Avin_33560(PF13358)
322710.Avin_08130(PF09084)
322710.Avin_09760(PF02371)
322710.Avin_48990(PF00148)
322710.Avin_43180+
322710.Avin_42740(PF00342)
322710.Avin_41580(PF13565)
322710.Avin_02300(PF10685)
322710.Avin_08230(PF05935)
322710.Avin_06680+
322710.Avin_44510(PF08028)
322710.Avin_09550(PF13358)
322710.Avin_25130(PF13358)
322710.Avin_24710(PF01609)
322710.Avin_15160(PF05187)
322710.Avin_41850(PF01609)
322710.Avin_24660(PF01609)
322710.Avin_12240(PF01609)
322710.Avin_11130(PF10685)
322710.Avin_03540+
322710.Avin_42130(PF01118)
322710.Avin_31110(PF09084)
322710.Avin_35590(PF02371)
322710.Avin_51230(PF12708)
322710.Avin_13570(PF13358)
322710.Avin_01400(PF00148)
322710.Avin_33340(PF01609)
322710.Avin_49910(PF00121)
322710.Avin_21570(PF08028)
322710.Avin_01620(PF01106)
322710.Avin_31320(PF01609)
322710.Avin_17400(PF05187)
322710.Avin_36450(PF01609)
322710.Avin_13560(PF02371)
322710.Avin_21760(PF13358)
322710.Avin_51170(PF12708)
322710.Avin_11020(PF00477)not used
322710.Avin_44370PF09139
322710.Avin_32100(PF01609)
322710.Avin_28760(PF01106)
322710.Avin_31480(PF08028)
322710.Avin_05610(PF03928)
322710.Avin_23930(PF13358)
322710.Avin_24580(PF13565)
322710.Avin_30290+
322710.Avin_38180+
322710.Avin_12690+
322710.Avin_39870(PF00148)
322710.Avin_31490(PF08028)
322710.Avin_14300(PF02371)
322710.Avin_45790(PF02371)
322710.Avin_09600(PF01609)
322710.Avin_08700(PF01118)
322710.Avin_01700+
322710.Avin_49280+
322710.Avin_43800(PF08028)
322710.Avin_47760+
322710.Avin_17650(PF00342)
322710.Avin_31810(PF08787)
322710.Avin_12570+
322710.Avin_15060(PF08028)
322710.Avin_11010(PF00477)
322710.Avin_35600(PF13565)
322710.Avin_16640(PF01609)
322710.Avin_45320(PF01609)
322710.Avin_43650(PF08028)
322710.Avin_28480+
322710.Avin_00700(PF13358)
322710.Avin_37570+
322710.Avin_07380(PF10685)not used
322710.Avin_10550(PF05187)
322710.Avin_29320(PF03928)
322710.Avin_30240+
322710.Avin_16630(PF00342)
322710.Avin_43640(PF08028)
322710.Avin_18340(PF01609)
322710.Avin_33450(PF13683)
322710.Avin_01390(PF00148)
322710.Avin_47000+
322710.Avin_25810(PF00565)
322710.Avin_48970(PF00148)
322710.Avin_01450(PF00148)
322710.Avin_30230(PF02371)
322710.Avin_12980(PF01583)
322710.Avin_49400(PF12708)
322710.Avin_41180(PF00565)
322710.Avin_02610(PF00148)
322710.Avin_35270+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.25 (18/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================