Effective results for Bifidobacterium breve UCC2003 (eggnog40)

Summary

Number of putative secreted proteins: 33
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 33 proteins (1 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
326426.Bbr_0698(PF06541)ER
326426.Bbr_0699(PF06541)mitochondrial
326426.Bbr_1142(PF03644)ER
326426.Bbr_0030(PF11175)(plastid)
326426.Bbr_1719(PF08354)(plastid)
326426.Bbr_0439(PF05704)(mitochondrial)
326426.Bbr_0453(PF01695)
326426.Bbr_0455(PF01695)
326426.Bbr_0691(PF01695)
326426.Bbr_1856PF05691
326426.Bbr_1700(PF03051)
326426.Bbr_0462(PF01695)
326426.Bbr_1511(PF01695)
326426.Bbr_1861(PF11175)
326426.Bbr_1818(PF03051)
326426.Bbr_0834(PF01695)
326426.Bbr_0231(PF06541)
326426.Bbr_1326(PF14512)
326426.Bbr_1838(PF01695)
326426.Bbr_1905(PF13151)
326426.Bbr_1137(PF14512)
326426.Bbr_1699(PF03051)
326426.Bbr_1115(PF01695)
326426.Bbr_0151(PF01695)
326426.Bbr_1165(PF01695)
326426.Bbr_1412(PF01695)
326426.Bbr_0951(PF01695)
326426.Bbr_1774(PF01695)
326426.Bbr_1401(PF01695)
326426.Bbr_1403(PF01695)
326426.Bbr_1540(PF01695)
326426.Bbr_0207(PF01695)
326426.Bbr_0432(PF01695)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================