Effective results for Psychrobacter cryohalolentis K5 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 22 proteins (2 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
335284.Pcryo_0631(PF13276)(mitochondrial)
335284.Pcryo_0392(PF13276)
335284.Pcryo_1333(PF05724)
335284.Pcryo_0748(PF13276)
335284.Pcryo_2077(PF13276)
335284.Pcryo_2076(PF13518)
335284.Pcryo_2081(PF05724)
335284.Pcryo_2411(PF13518)
335284.Pcryo_2412(PF13276)
335284.Pcryo_2244(PF05724)
335284.Pcryo_2438(PF13518)
335284.Pcryo_2437(PF13276)
335284.Pcryo_1577(PF13276)
335284.Pcryo_1578(PF13518)
335284.Pcryo_0926(PF13276)
335284.Pcryo_0848(PF13276)
335284.Pcryo_0847(PF13518)
335284.Pcryo_0447PF10013
335284.Pcryo_0448PF10013not used
335284.Pcryo_0718(PF13518)
335284.Pcryo_0717(PF13276)
335284.Pcryo_2445(PF14328)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================