Effective results for Chlorobium chlorochromatii CaD3 (eggnog40)

Summary

Number of putative secreted proteins: 75
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 75 proteins (15 high, 60 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
340177.Cag_1235PF13205 PF14252(ER)
340177.Cag_0519(PF13271)(ER)
340177.Cag_1242PF14252(ER)
340177.Cag_1809PF13205ER
340177.Cag_0529PF13205mitochondrial
340177.Cag_0822PF10046mitochondrial; (mitochondrial)
340177.Cag_1560PF13205 PF14252(mitochondrial)
340177.Cag_1997(PF07720)ER
340177.Cag_1671(PF08011) (PF09820)
340177.Cag_0508(PF08477) (PF16095)
340177.Cag_0507(PF08477) (PF16095)
340177.Cag_0724(PF08011) (PF09820)
340177.Cag_1241(PF08011) (PF09820)
340177.Cag_0535(PF08011) (PF09820)
340177.Cag_1722PF13205(ER)
340177.Cag_1721(PF08011) (PF09820)
340177.Cag_1046(PF08011) (PF09820)
340177.Cag_0738PF13205 PF14252
340177.Cag_1897(PF06119) PF13205
340177.Cag_1080(PF08011) (PF09820)
340177.Cag_0755(PF08011) (PF09820)
340177.Cag_0034(PF12159) (PF10693)
340177.Cag_0227(PF11965)(mitochondrial)
340177.Cag_1024(PF08011) (PF09820)
340177.Cag_1025(PF08011) (PF09820)
340177.Cag_1026PF13205 (PF00059)
340177.Cag_1021(PF08011) (PF09820)
340177.Cag_1101(PF04326)
340177.Cag_0721(PF06250)
340177.Cag_1063(PF01610)
340177.Cag_1580(PF01610)
340177.Cag_0452(PF02661)
340177.Cag_0182(PF02661)
340177.Cag_0980(PF02661)
340177.Cag_0983(PF11965)
340177.Cag_1262(PF04383)
340177.Cag_1918(PF01610)
340177.Cag_1469(PF02661)
340177.Cag_1864(PF06250)
340177.Cag_1597PF13205
340177.Cag_1047PF14252
340177.Cag_2003(PF02661)
340177.Cag_1920PF14252
340177.Cag_1708(PF13271)
340177.Cag_1443(PF04383)
340177.Cag_1441(PF02661)
340177.Cag_0403(PF06250)
340177.Cag_0578(PF06250)
340177.Cag_0379(PF06250)
340177.Cag_1381(PF14701)
340177.Cag_1097(PF02661)
340177.Cag_0708(PF01610)
340177.Cag_0657(PF04326)
340177.Cag_1884(PF13271)
340177.Cag_1885(PF04326)
340177.Cag_0597(PF01610)
340177.Cag_1562(PF06250)
340177.Cag_1981(PF01610)
340177.Cag_0765(PF01610)
340177.Cag_0166(PF04326)
340177.Cag_0831(PF02661)
340177.Cag_0832(PF01610)
340177.Cag_0086(PF01610)
340177.Cag_1507(PF01610)
340177.Cag_0748(PF01610)
340177.Cag_1022PF13205
340177.Cag_0796(PF16114)
340177.Cag_1239PF14252
340177.Cag_0120(PF09366)
340177.Cag_0658(PF01610)
340177.Cag_0011(PF09366)
340177.Cag_0788(PF01610)
340177.Cag_0874(PF06250)
340177.Cag_1221(PF04326)
340177.Cag_0202(PF01610)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================