Effective results for Bacillus coagulans 36D1 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 42 proteins (2 high, 40 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
345219.Bcoa_1066				(PF01609)	(mitochondrial)
345219.Bcoa_1790				(PF01609)	(ER)
345219.Bcoa_0107				(PF04851)	(ER)
345219.Bcoa_1661				(PF11175)
345219.Bcoa_1660				(PF01609)
345219.Bcoa_1065				(PF01609)
345219.Bcoa_1657				(PF01609)
345219.Bcoa_1659				(PF11175)
345219.Bcoa_1782				(PF04851)
345219.Bcoa_1098				PF07173
345219.Bcoa_1838				(PF09664)
345219.Bcoa_1795				(PF01609)
345219.Bcoa_1881				(PF01609)
345219.Bcoa_1634				(PF00477)
345219.Bcoa_1860				(PF04851)
345219.Bcoa_3233				(PF05495)
345219.Bcoa_0572				(PF01609)
345219.Bcoa_2987				(PF04851)
345219.Bcoa_1987				(PF04851)
345219.Bcoa_0568				(PF04851)
345219.Bcoa_1994				(PF01609)
345219.Bcoa_1992				(PF01609)
345219.Bcoa_1371				(PF01609)
345219.Bcoa_1004				(PF01609)
345219.Bcoa_0445				(PF01609)
345219.Bcoa_0447				(PF05225)
345219.Bcoa_1815				(PF04851)
345219.Bcoa_0280				(PF04851)
345219.Bcoa_1737				(PF01969)
345219.Bcoa_1736				(PF01969)
345219.Bcoa_0460				(PF04851)
345219.Bcoa_0519				(PF04851)
345219.Bcoa_1939				(PF01609)
345219.Bcoa_1936				(PF01609)
345219.Bcoa_1933				(PF04851)
345219.Bcoa_0860				(PF01609)
345219.Bcoa_0871				(PF04851)
345219.Bcoa_1644				(PF01609)
345219.Bcoa_1597				PF13851
345219.Bcoa_1917				(PF04851)
345219.Bcoa_2034				(PF09664)
345219.Bcoa_2741				(PF09419)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================