Effective results for Caldicellulosiruptor saccharolyticus DSM 8903 (eggnog40)

Summary

Number of putative secreted proteins: 105
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 105 proteins (34 high, 71 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
351627.Csac_1482(PF05598) (PF01609)(mitochondrial)
351627.Csac_0807(PF05598) (PF01609)(mitochondrial)
351627.Csac_2096(PF05598) (PF01609)(mitochondrial)
351627.Csac_1980(PF05598) (PF01609)(mitochondrial)
351627.Csac_2181(PF05598) (PF01609)(mitochondrial)
351627.Csac_2323(PF05598) (PF01609)(mitochondrial)
351627.Csac_0471(PF05598) (PF01609)(mitochondrial)
351627.Csac_0652(PF05598) (PF01609)(mitochondrial)
351627.Csac_0651(PF05598) (PF01609)(mitochondrial)
351627.Csac_0099(PF05598) (PF01609)(mitochondrial)
351627.Csac_0045(PF05598) (PF01609)(mitochondrial)
351627.Csac_0318(PF05598) (PF01609)(mitochondrial)
351627.Csac_1112(PF05598) (PF01609)(mitochondrial)
351627.Csac_0735(PF04450)ER
351627.Csac_2410(PF00331)ER
351627.Csac_0696(PF00331)ER
351627.Csac_0853(PF04041)(mitochondrial); mitochondrial
351627.Csac_1078(PF00331)ER
351627.Csac_0064(PF01930)(ER)
351627.Csac_0884PF02183ER
351627.Csac_0259(PF04041)(mitochondrial)
351627.Csac_0762(PF04041)mitochondrial
351627.Csac_1365(PF01695)(mitochondrial)
351627.Csac_0374(PF06745)(plastid)
351627.Csac_2396PF06746 (PF01930)
351627.Csac_1014(PF16661)(plastid)
351627.Csac_0610PF00872plastid
351627.Csac_1696(PF01909)(mitochondrial)
351627.Csac_0289PF00872
351627.Csac_0280PF00872
351627.Csac_0353PF00872
351627.Csac_1175PF00872
351627.Csac_1179PF00872
351627.Csac_1485PF00872
351627.Csac_2610PF00872
351627.Csac_0041(PF01695)
351627.Csac_0160PF00872
351627.Csac_2469PF00872
351627.Csac_2599PF00872
351627.Csac_2607PF00872
351627.Csac_2606(PF01695)
351627.Csac_0570PF00872
351627.Csac_0375(PF06745)
351627.Csac_1717(PF01969)
351627.Csac_1718(PF01969)
351627.Csac_1842(PF16661)
351627.Csac_0541PF00872
351627.Csac_1709(PF01909)
351627.Csac_1452(PF01930)
351627.Csac_0333(PF01695)
351627.Csac_0480PF00872
351627.Csac_0556PF00872
351627.Csac_1738(PF06745)
351627.Csac_1054(PF09419)
351627.Csac_2388PF00872
351627.Csac_2389(PF01695)
351627.Csac_0769(PF01633)
351627.Csac_0588(PF01909)
351627.Csac_0123(PF01909)
351627.Csac_0839(PF01695)
351627.Csac_0052PF00872
351627.Csac_1504(PF07892)
351627.Csac_0011(PF07892)
351627.Csac_1688(PF01609)
351627.Csac_1689(PF05598)
351627.Csac_0229(PF01909)
351627.Csac_1667(PF01909)
351627.Csac_1668(PF01609)
351627.Csac_0911(PF01909)
351627.Csac_1086PF00872
351627.Csac_2744PF00872
351627.Csac_0218(PF01909)
351627.Csac_1672(PF01909)
351627.Csac_2408(PF00331)
351627.Csac_2405(PF00331)
351627.Csac_0844PF00872
351627.Csac_0842PF00872
351627.Csac_0849PF00872
351627.Csac_0204(PF00331)
351627.Csac_0061PF00872
351627.Csac_0060(PF01695)
351627.Csac_0069(PF05598)
351627.Csac_2217PF00872
351627.Csac_0474(PF01695)
351627.Csac_0656(PF05598)
351627.Csac_0789(PF01909)
351627.Csac_2511(PF01609)
351627.Csac_1157PF00872
351627.Csac_0319(PF01930)
351627.Csac_2521PF00872
351627.Csac_2527(PF04041)
351627.Csac_0327PF00872
351627.Csac_0324PF00872
351627.Csac_0322(PF01695)
351627.Csac_0258(PF04041)
351627.Csac_1236(PF01909)
351627.Csac_0335PF00872
351627.Csac_0334PF00872
351627.Csac_1592(PF04423)
351627.Csac_2676(PF01909)
351627.Csac_2105(PF01695)
351627.Csac_0435PF00872
351627.Csac_0296(PF04041)
351627.Csac_0767(PF01633)
351627.Csac_1586(PF01909)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================