Effective results for Psychromonas ingrahamii 37 (eggnog40)

Summary

Number of putative secreted proteins: 46
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 46 proteins (13 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
357804.Ping_3250PF11999ER
357804.Ping_3251PF11999ER
357804.Ping_1782PF11999(ER)
357804.Ping_3248PF11999ER
357804.Ping_1164(PF13936)(mitochondrial)
357804.Ping_2538(PF08495) (PF10442)(mitochondrial)
357804.Ping_1550(PF10013)(mitochondrial)
357804.Ping_2613(PF00163)(mitochondrial)
357804.Ping_3153(PF02010)ER
357804.Ping_2599(PF13936)(mitochondrial)
357804.Ping_1485(PF13936)(mitochondrial)
357804.Ping_0848PF11999(ER)
357804.Ping_3500(PF00163)(mitochondrial)
357804.Ping_1815(PF13936)(mitochondrial)
357804.Ping_2652(PF13936)(mitochondrial)
357804.Ping_2317PF11999(ER)
357804.Ping_3499(PF01000) (PF01193)
357804.Ping_2699(PF13551) (PF13592)
357804.Ping_1345(PF13551) (PF13592)
357804.Ping_0002(PF13551) (PF13592)
357804.Ping_1360(PF13551) (PF13592)
357804.Ping_1512(PF13551) (PF13592)
357804.Ping_0141(PF13936)(mitochondrial)
357804.Ping_2614(PF01000) (PF01193)
357804.Ping_3194(PF13551) (PF13592)
357804.Ping_1203(PF08495) (PF10442)
357804.Ping_1202(PF08495) (PF10442)
357804.Ping_1204(PF08495) (PF10442)
357804.Ping_1530(PF09996)
357804.Ping_3498(PF01196)
357804.Ping_1527(PF09996)
357804.Ping_2850PF11999
357804.Ping_1294(PF10354)
357804.Ping_0374PF01536
357804.Ping_1818PF03366
357804.Ping_0634(PF13875)
357804.Ping_3638(PF05706)
357804.Ping_1247(PF02933)
357804.Ping_2612PF00411
357804.Ping_2611PF00416
357804.Ping_2615(PF01196)
357804.Ping_3395(PF01786)
357804.Ping_1954(PF14701)
357804.Ping_3501PF00411
357804.Ping_3502PF00416
357804.Ping_1733(PF03522)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.375 (11/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================