Effective results for Ramlibacter tataouinensis TTB310 (eggnog40)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 24 proteins (0 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
365046.Rta_04070(PF12974)ER
365046.Rta_20380(PF12974)(mitochondrial); mitochondrial
365046.Rta_00630(PF06779)ER
365046.Rta_20360(PF12974)ER
365046.Rta_05940(PF06779)ER
365046.Rta_33570(PF12974)mitochondrial
365046.Rta_14940(PF12974)ER; (ER)
365046.Rta_13870(PF12974)ER
365046.Rta_22540(PF12974)ER; (ER)
365046.Rta_20390(PF12974)plastid
365046.Rta_23710(PF02201)(mitochondrial)
365046.Rta_05280(PF10685)plastid
365046.Rta_04710(PF01176)
365046.Rta_06820(PF01896)
365046.Rta_21240(PF07958)
365046.Rta_21230(PF12471)
365046.Rta_07780(PF01896)
365046.Rta_37530(PF02201)
365046.Rta_10220(PF10685)
365046.Rta_20910(PF10685)
365046.Rta_36100(PF01176)
365046.Rta_01920(PF06779)
365046.Rta_27590(PF01176)
365046.Rta_35870(PF10685)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================