Effective results for Sinorhizobium medicae WSM419 (eggnog40)

Summary

Number of putative secreted proteins: 381
- Predicted by EffectiveT3: 99 (high confidence), 170 (low confidence)
- Predicted by EffectiveCCBD: 12 within, 7 before, 21 behind expected region 25..70aa
- Predicted by T4SEpre: 71
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 14 proteins (2 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
366394.Smed_0078+(ER)
366394.Smed_1476+(mitochondrial); (plastid)
366394.Smed_1612(PF07648)ER
366394.Smed_3030+ER
366394.Smed_1859+mitochondrial
366394.Smed_1042+ER
366394.Smed_2809(>)ER
366394.Smed_1826+ER; (ER)
366394.Smed_1827+ER
366394.Smed_0278+(mitochondrial)
366394.Smed_0187+(ER); plastid
366394.Smed_1633(PF05630)ER
366394.Smed_1832+ER; (ER)
366394.Smed_2764+(mitochondrial); plastid
366394.Smed_0265+mitochondrial; plastid
366394.Smed_1330+(mitochondrial); plastid
366394.Smed_2912(>)ER
366394.Smed_0216+(mitochondrial); mitochondrial
366394.Smed_2966+mitochondrial; (mitochondrial)
366394.Smed_2968(PF09731)mitochondrial
366394.Smed_2969+ER
366394.Smed_2978++(mitochondrial)
366394.Smed_2371(>)ER
366394.Smed_2373+ER
366394.Smed_1041+ER
366394.Smed_2623+ER
366394.Smed_3469+(mitochondrial)
366394.Smed_2987(PF05023)ER
366394.Smed_3120(<)(mitochondrial)
366394.Smed_2187+ER
366394.Smed_2058(>)(ER)
366394.Smed_3475+ER
366394.Smed_1424PF02475mitochondrial
366394.Smed_1426+mitochondrial; (mitochondrial)
366394.Smed_2604+(mitochondrial)
366394.Smed_0450+ER
366394.Smed_0636+ER
366394.Smed_2296+mitochondrial
366394.Smed_0288+ER
366394.Smed_1863(PF05630)ER
366394.Smed_0721+ER
366394.Smed_1677(PF14216)(mitochondrial)
366394.Smed_1865+(mitochondrial)
366394.Smed_1129+mitochondrial
366394.Smed_2643+(ER)
366394.Smed_3098+ER
366394.Smed_3231+(mitochondrial); (plastid)
366394.Smed_2738+(mitochondrial)
366394.Smed_1299(+)(mitochondrial); mitochondrial
366394.Smed_2696+(mitochondrial)
366394.Smed_1639+plastid
366394.Smed_1040+(plastid)
366394.Smed_0743(+)(mitochondrial)
366394.Smed_0277+plastid
366394.Smed_3561(+)(mitochondrial)
366394.Smed_2572+(mitochondrial)
366394.Smed_0152+(mitochondrial)
366394.Smed_0156+(plastid)
366394.Smed_2948(+)ER
366394.Smed_1682+(mitochondrial); not used
366394.Smed_2316(+)(mitochondrial); plastid
366394.Smed_2313(+)ER; (ER)
366394.Smed_1995(+)(ER)
366394.Smed_1692(+)ER
366394.Smed_1187+(plastid)
366394.Smed_1983(+)(mitochondrial); (plastid)
366394.Smed_0376(+)(ER)
366394.Smed_2608+(ER)
366394.Smed_0297+(mitochondrial)
366394.Smed_0912+(mitochondrial); not used
366394.Smed_1088(+)(mitochondrial); (plastid)
366394.Smed_0932(+)mitochondrial
366394.Smed_1387++
366394.Smed_1517+(ER)
366394.Smed_2018++
366394.Smed_1872+plastid
366394.Smed_2784+(ER)
366394.Smed_0700(>)(ER)
366394.Smed_3118+(mitochondrial)
366394.Smed_0896(>)
366394.Smed_0073+
366394.Smed_1617(+)+
366394.Smed_1610(>)
366394.Smed_1107+
366394.Smed_1105+
366394.Smed_2923+
366394.Smed_2043+
366394.Smed_0558+
366394.Smed_2744(+)(plastid)
366394.Smed_2747+
366394.Smed_2740+
366394.Smed_3508(<)
366394.Smed_1911+
366394.Smed_1914+
366394.Smed_3373+
366394.Smed_1669(+)(plastid)
366394.Smed_0873+
366394.Smed_0877+
366394.Smed_0477+
366394.Smed_0479+
366394.Smed_0185(>)
366394.Smed_1456+
366394.Smed_2831(>)
366394.Smed_1123(<)
366394.Smed_2582+
366394.Smed_2586+
366394.Smed_2167+
366394.Smed_2761(+)(ER)
366394.Smed_2767+
366394.Smed_1009+
366394.Smed_2564+
366394.Smed_1557(+)(plastid)
366394.Smed_3413+
366394.Smed_0821(>)
366394.Smed_0868+
366394.Smed_0860+
366394.Smed_0041+
366394.Smed_0193+
366394.Smed_2429+
366394.Smed_1484+
366394.Smed_1937(<)not used
366394.Smed_1150+
366394.Smed_1806(<)
366394.Smed_1320(+)(plastid)
366394.Smed_1035+
366394.Smed_1924+
366394.Smed_1817+
366394.Smed_1812(PF05704)
366394.Smed_2144+
366394.Smed_2145+
366394.Smed_3239+
366394.Smed_3548(PF07653)
366394.Smed_3439(>)
366394.Smed_0841(+)(plastid)
366394.Smed_0025+
366394.Smed_0338+
366394.Smed_1312(+)(>)
366394.Smed_1778(+)ER; not used
366394.Smed_3155+
366394.Smed_2152+
366394.Smed_0810+
366394.Smed_2556+
366394.Smed_3204(>)
366394.Smed_0238(<)
366394.Smed_0232+
366394.Smed_1582+
366394.Smed_0301+
366394.Smed_0490PF02475
366394.Smed_0166+
366394.Smed_1789+
366394.Smed_0066+not used
366394.Smed_0064+
366394.Smed_1590+
366394.Smed_1047+
366394.Smed_2172+
366394.Smed_3214+
366394.Smed_2500+
366394.Smed_0937+
366394.Smed_0957+
366394.Smed_1570+
366394.Smed_2883+
366394.Smed_2310(+)+
366394.Smed_2319(PF04218)
366394.Smed_3130+
366394.Smed_1132(>)
366394.Smed_3045+
366394.Smed_1204+
366394.Smed_3462(>)
366394.Smed_1568+
366394.Smed_0583(+)(plastid)
366394.Smed_1219(+)(mitochondrial)
366394.Smed_1218(PF11523)
366394.Smed_1366+
366394.Smed_1369+
366394.Smed_2186(>)
366394.Smed_1985(+)(ER)
366394.Smed_0010+
366394.Smed_0541+
366394.Smed_3470(+)ER
366394.Smed_0805+
366394.Smed_0972+
366394.Smed_2896+
366394.Smed_0110+
366394.Smed_0574+
366394.Smed_1510+
366394.Smed_0592(+)(mitochondrial)
366394.Smed_1228+
366394.Smed_1428+
366394.Smed_3276+
366394.Smed_3112+
366394.Smed_1259+
366394.Smed_2465+
366394.Smed_2826+
366394.Smed_0748+
366394.Smed_0349+
366394.Smed_0344+
366394.Smed_1653+
366394.Smed_1233+
366394.Smed_2455+
366394.Smed_2077+
366394.Smed_2074+
366394.Smed_2079+
366394.Smed_3255+
366394.Smed_3250(+)(ER)
366394.Smed_3498+
366394.Smed_2133+
366394.Smed_0281+
366394.Smed_0919+
366394.Smed_1538(PF01442)
366394.Smed_1404(>)
366394.Smed_0117+
366394.Smed_2210+
366394.Smed_2840(>)
366394.Smed_1668+
366394.Smed_2067+
366394.Smed_2369+
366394.Smed_2713+
366394.Smed_2362+
366394.Smed_2448+
366394.Smed_0383+
366394.Smed_1524+
366394.Smed_1678+
366394.Smed_2473(+)(ER)
366394.Smed_2817(>)
366394.Smed_2723+
366394.Smed_2721+
366394.Smed_2536+
366394.Smed_1463+
366394.Smed_1891+
366394.Smed_1608+
366394.Smed_1117+
366394.Smed_1845+
366394.Smed_2398(>)
366394.Smed_2391(PF00026)
366394.Smed_3355(>)
366394.Smed_0820+
366394.Smed_2739+
366394.Smed_2731(+)(plastid)
366394.Smed_3517+
366394.Smed_0255(+)(plastid)
366394.Smed_0416+
366394.Smed_0411(<)
366394.Smed_0891(+)
366394.Smed_1290(+)
366394.Smed_1106(+)
366394.Smed_2104(+)
366394.Smed_2743(+)
366394.Smed_1978(+)
366394.Smed_0083(+)
366394.Smed_1048(+)
366394.Smed_1043(+)
366394.Smed_0400(+)
366394.Smed_0406(+)
366394.Smed_2254(+)
366394.Smed_3377(+)
366394.Smed_0276(+)
366394.Smed_0874(+)
366394.Smed_0474(+)
366394.Smed_1054(+)
366394.Smed_1058(+)
366394.Smed_0988(+)
366394.Smed_1121(+)
366394.Smed_2086(+)
366394.Smed_2342(+)
366394.Smed_2169(+)
366394.Smed_3562(+)
366394.Smed_3560(+)
366394.Smed_0269(+)
366394.Smed_0463(+)
366394.Smed_1331(+)
366394.Smed_1333(+)
366394.Smed_2201(+)
366394.Smed_0687(+)
366394.Smed_3423(+)
366394.Smed_0320(+)
366394.Smed_0326(+)
366394.Smed_0515(+)
366394.Smed_0147(+)
366394.Smed_1493(+)
366394.Smed_1921(+)
366394.Smed_2219(+)
366394.Smed_2989(+)
366394.Smed_1814(+)
366394.Smed_3162(+)
366394.Smed_3160(+)
366394.Smed_2141(+)
366394.Smed_3432(+)
366394.Smed_1342(+)
366394.Smed_2126(+)
366394.Smed_1792(+)
366394.Smed_2379(+)
366394.Smed_2156(+)
366394.Smed_1593(+)
366394.Smed_0836(+)
366394.Smed_0307(+)
366394.Smed_0302(+)
366394.Smed_0167(+)
366394.Smed_0160(+)
366394.Smed_0015(+)
366394.Smed_1010(+)
366394.Smed_1787(+)
366394.Smed_1783(+)
366394.Smed_1046(+)
366394.Smed_2895(+)
366394.Smed_0069(+)
366394.Smed_2415(+)
366394.Smed_2092(+)
366394.Smed_3327(+)
366394.Smed_0799(+)
366394.Smed_1579(+)
366394.Smed_1754(+)
366394.Smed_1750(+)
366394.Smed_2887(+)
366394.Smed_1372(+)
366394.Smed_2959(+)
366394.Smed_1991(+)
366394.Smed_1135(+)
366394.Smed_3264(+)
366394.Smed_3263(+)
366394.Smed_0101(+)
366394.Smed_0103(+)
366394.Smed_0585(+)
366394.Smed_1742(+)
366394.Smed_1364(+)
366394.Smed_2431(+)
366394.Smed_3128(+)
366394.Smed_1980(+)
366394.Smed_3052(+)
366394.Smed_2054(+)
366394.Smed_2619(+)
366394.Smed_1782(+)
366394.Smed_0976(+)
366394.Smed_0979(+)
366394.Smed_0575(+)
366394.Smed_2994(+)
366394.Smed_2261(+)
366394.Smed_2824(+)
366394.Smed_0290(+)
366394.Smed_0523(+)
366394.Smed_1438(+)
366394.Smed_1346(+)
366394.Smed_1656(+)
366394.Smed_2851(+)
366394.Smed_3103(+)
366394.Smed_1495(+)
366394.Smed_3496(+)
366394.Smed_0133(+)
366394.Smed_0351(+)
366394.Smed_0911(+)
366394.Smed_0752(+)
366394.Smed_0758(+)
366394.Smed_1537(+)
366394.Smed_1144(+)
366394.Smed_2846(+)
366394.Smed_2449(+)
366394.Smed_1893(+)
366394.Smed_2660(+)
366394.Smed_2711(+)
366394.Smed_2717(+)
366394.Smed_2716(+)
366394.Smed_1414(+)
366394.Smed_0923(+)
366394.Smed_0387(+)
366394.Smed_0720(+)
366394.Smed_0722(+)
366394.Smed_1095(+)
366394.Smed_1255(+)
366394.Smed_3456(+)
366394.Smed_0736(+)
366394.Smed_1461(+)
366394.Smed_1263(+)
366394.Smed_1116(+)
366394.Smed_2007(+)
366394.Smed_2006(+)
366394.Smed_0827(+)
366394.Smed_0822(+)
366394.Smed_0251(+)
366394.Smed_1973(+)
366394.Smed_0257(+)
366394.Smed_0092(+)
366394.Smed_1540(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.2 (2/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================