Effective results for Streptococcus sanguinis SK36 (eggnog40)

Summary

Number of putative secreted proteins: 138
- Predicted by T4SEpre: 108
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 51 proteins (2 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
388919.SSA_1476+ER
388919.SSA_0127(PF00344)mitochondrial
388919.SSA_0832(PF00344)ER
388919.SSA_1384+ER
388919.SSA_1990+ER
388919.SSA_1991+ER
388919.SSA_1997(PF02517)ER
388919.SSA_0021+ER
388919.SSA_0152+mitochondrial
388919.SSA_0931+ER
388919.SSA_0803+ER
388919.SSA_2225PF02916(mitochondrial)
388919.SSA_0036(PF05257)ER
388919.SSA_0424+ER
388919.SSA_0817+ER
388919.SSA_2305+ER; (ER)
388919.SSA_1845+(mitochondrial)
388919.SSA_1339+ER
388919.SSA_0002+mitochondrial; (mitochondrial)
388919.SSA_0019(PF05257)ER
388919.SSA_1544+ER
388919.SSA_0765(PF02517)ER
388919.SSA_0766(PF02517)ER
388919.SSA_0162+mitochondrial
388919.SSA_2327+ER
388919.SSA_1315+ER
388919.SSA_1704+ER
388919.SSA_0750+ER
388919.SSA_0753+ER
388919.SSA_0375+ER
388919.SSA_1337+(ER)
388919.SSA_0193(PF02517)ER
388919.SSA_2121(PF05738)ER
388919.SSA_0700(PF02517)ER
388919.SSA_0227(PF05738)ER
388919.SSA_1591(PF03577)ER
388919.SSA_1593(PF03577)ER
388919.SSA_1740(PF02517)(mitochondrial)
388919.SSA_1909+ER
388919.SSA_0727(PF02517)(ER)
388919.SSA_1633(PF05738)ER
388919.SSA_1632(PF05738)ER
388919.SSA_1634(PF05738)ER
388919.SSA_0346(PF02517)(ER)
388919.SSA_1129+ER
388919.SSA_2077(PF02517)ER
388919.SSA_2252(PF02517)ER
388919.SSA_1813+(ER)
388919.SSA_1357(PF02517)(mitochondrial)
388919.SSA_1358(PF02517)(ER)
388919.SSA_0403(PF02517)ER
388919.SSA_0397(PF13787)ER
388919.SSA_0714(PF13787)ER
388919.SSA_2004+(mitochondrial)
388919.SSA_0093+mitochondrial; (mitochondrial)
388919.SSA_0253(PF02517)(ER); ER
388919.SSA_0067+ER
388919.SSA_0617+ER
388919.SSA_2340+mitochondrial; (mitochondrial)
388919.SSA_0599(PF03083)ER
388919.SSA_1663(PF05738)ER
388919.SSA_0126+(mitochondrial)
388919.SSA_1042+(ER)
388919.SSA_2314+(mitochondrial)
388919.SSA_0304(PF05257)(ER)
388919.SSA_0164(PF05257)(ER)
388919.SSA_1555+(plastid)
388919.SSA_1767+(mitochondrial)
388919.SSA_1370(PF02517)(mitochondrial)
388919.SSA_0434(PF02971) (PF07837)
388919.SSA_0438+(mitochondrial)
388919.SSA_0394(PF03083)(ER)
388919.SSA_2382+(plastid)
388919.SSA_0453(PF03714)
388919.SSA_1479+
388919.SSA_1989+
388919.SSA_2181+
388919.SSA_1861+
388919.SSA_1996+
388919.SSA_0158+
388919.SSA_0935+
388919.SSA_1857+
388919.SSA_0324+
388919.SSA_0925+
388919.SSA_0818(PF09359)
388919.SSA_2239+
388919.SSA_0316+
388919.SSA_0793+
388919.SSA_2206+
388919.SSA_1942+
388919.SSA_2148+
388919.SSA_2210+
388919.SSA_1227+
388919.SSA_1170+
388919.SSA_1482(PF03714)
388919.SSA_1488+
388919.SSA_1336+
388919.SSA_1102+
388919.SSA_0568(PF02938)
388919.SSA_0694+
388919.SSA_0368+
388919.SSA_2120+
388919.SSA_2123+
388919.SSA_2270(PF02938)
388919.SSA_2278+
388919.SSA_1540(PF05495)
388919.SSA_0707+
388919.SSA_0515+
388919.SSA_0356(PF03577)
388919.SSA_1291PF15636
388919.SSA_0728(PF02517)
388919.SSA_0348(PF02517)
388919.SSA_0656+
388919.SSA_2076+
388919.SSA_1087+
388919.SSA_1756+
388919.SSA_1620+
388919.SSA_0669+
388919.SSA_0246+
388919.SSA_0860(PF05257)
388919.SSA_0522+
388919.SSA_2384+
388919.SSA_1930+
388919.SSA_0068+
388919.SSA_0605+
388919.SSA_0264+
388919.SSA_2026(PF03596)
388919.SSA_2288(PF03596)
388919.SSA_1018+
388919.SSA_1079(PF02517)
388919.SSA_2034+
388919.SSA_2342(PF09359)
388919.SSA_1889+
388919.SSA_1666(PF05738)
388919.SSA_0131+
388919.SSA_2378+
388919.SSA_2372+
388919.SSA_0597+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================