Effective results for Granulibacter bethesdensis CGDNIH1 (eggnog40)

Summary

Number of putative secreted proteins: 46
- Predicted by T4SEpre: 44
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 9 proteins (0 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391165.GbCGDNIH1_2146+ER
391165.GbCGDNIH1_2028(PF13436)ER
391165.GbCGDNIH1_1820+mitochondrial
391165.GbCGDNIH1_2057+mitochondrial
391165.GbCGDNIH1_1330+ER
391165.GbCGDNIH1_1327+mitochondrial
391165.GbCGDNIH1_1720+ER
391165.GbCGDNIH1_1276+mitochondrial
391165.GbCGDNIH1_0803+(mitochondrial)
391165.GbCGDNIH1_0060(PF13704)(mitochondrial)
391165.GbCGDNIH1_0596+(ER); (plastid)
391165.GbCGDNIH1_0703+mitochondrial
391165.GbCGDNIH1_0517+(mitochondrial)
391165.GbCGDNIH1_2160+(ER)
391165.GbCGDNIH1_2390+
391165.GbCGDNIH1_0771+
391165.GbCGDNIH1_0373+
391165.GbCGDNIH1_0419+
391165.GbCGDNIH1_0963+
391165.GbCGDNIH1_0988+
391165.GbCGDNIH1_1163(PF14832)
391165.GbCGDNIH1_1839+
391165.GbCGDNIH1_0577+
391165.GbCGDNIH1_1141(PF13704)
391165.GbCGDNIH1_1936+
391165.GbCGDNIH1_1249+
391165.GbCGDNIH1_0324(PF13704)
391165.GbCGDNIH1_0780+
391165.GbCGDNIH1_2167+
391165.GbCGDNIH1_2092+
391165.GbCGDNIH1_0534+
391165.GbCGDNIH1_2181+
391165.GbCGDNIH1_1066+
391165.GbCGDNIH1_1501(PF13704)
391165.GbCGDNIH1_1935+
391165.GbCGDNIH1_0809+
391165.GbCGDNIH1_0062(PF13704)
391165.GbCGDNIH1_0470+
391165.GbCGDNIH1_1059+
391165.GbCGDNIH1_2435+
391165.GbCGDNIH1_0866+
391165.GbCGDNIH1_2422(PF09731)
391165.GbCGDNIH1_2289+
391165.GbCGDNIH1_1435+
391165.GbCGDNIH1_1546(PF00648)
391165.GbCGDNIH1_1997+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.4 (4/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================