Effective results for Beijerinckia indica subsp. indica ATCC 9039 (eggnog40)

Summary

Number of putative secreted proteins: 81
- Predicted by T4SEpre: 79
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 18 proteins (2 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
395963.Bind_0024+mitochondrial
395963.Bind_0252+ER
395963.Bind_2756(PF07250)(mitochondrial)
395963.Bind_2752(PF02230)ER
395963.Bind_1951+ER
395963.Bind_1556+ER
395963.Bind_1190+ER
395963.Bind_3201+mitochondrial
395963.Bind_1985+ER
395963.Bind_2853+(mitochondrial); (plastid)
395963.Bind_0110+(mitochondrial)
395963.Bind_1640+ER
395963.Bind_1645+ER
395963.Bind_0124+ER
395963.Bind_1725+(mitochondrial); mitochondrial
395963.Bind_2387(PF06455)ER
395963.Bind_0137+ER
395963.Bind_2248+ER
395963.Bind_3620+ER
395963.Bind_1451+ER
395963.Bind_0858+(mitochondrial)
395963.Bind_2000(PF13207)ER; mitochondrial
395963.Bind_3630+ER
395963.Bind_0447(PF13506)(mitochondrial)
395963.Bind_3067+(mitochondrial)
395963.Bind_1755+(ER)
395963.Bind_1840+(mitochondrial)
395963.Bind_0284PF08557(mitochondrial)
395963.Bind_3654+(ER)
395963.Bind_2724+(mitochondrial)
395963.Bind_0684+
395963.Bind_0446(PF02230)
395963.Bind_2117+
395963.Bind_3084+
395963.Bind_3089(PF06080)
395963.Bind_1497+
395963.Bind_0304+
395963.Bind_1301(PF06080)
395963.Bind_1013(PF02844)
395963.Bind_1018+
395963.Bind_3416+
395963.Bind_2348(PF01442)
395963.Bind_2578(PF14330)
395963.Bind_3046+
395963.Bind_0782+
395963.Bind_1662+
395963.Bind_0025+
395963.Bind_0487+
395963.Bind_0486+
395963.Bind_0571+
395963.Bind_0801PF16575
395963.Bind_2331+
395963.Bind_2183+
395963.Bind_2637+
395963.Bind_3580+
395963.Bind_0007+
395963.Bind_1249+
395963.Bind_3268+
395963.Bind_0432(PF02230)
395963.Bind_3673(PF13506)
395963.Bind_3675+
395963.Bind_3499+
395963.Bind_1066(PF02230)
395963.Bind_0382+
395963.Bind_0251+
395963.Bind_1383(PF02844)
395963.Bind_2707+
395963.Bind_1587+
395963.Bind_0400+
395963.Bind_1667+
395963.Bind_3286+
395963.Bind_1670+
395963.Bind_1050+
395963.Bind_2904+
395963.Bind_3390+
395963.Bind_0468+
395963.Bind_2730+
395963.Bind_3172+
395963.Bind_0451(PF13506)
395963.Bind_2109+
395963.Bind_1356+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================