Effective results for Dinoroseobacter shibae DFL 12 = DSM 16493 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
398580.Dshi_3357(PF13276) (PF13683)(plastid)
398580.Dshi_0926(PF13276) (PF13683)(plastid)
398580.Dshi_2898(PF03209)(mitochondrial)
398580.Dshi_2593(PF08856)(mitochondrial)
398580.Dshi_3529(PF03209)ER
398580.Dshi_3539(PF03209)(mitochondrial); (ER)
398580.Dshi_0404(PF13276) (PF13683)(plastid)
398580.Dshi_3385(PF09295)ER
398580.Dshi_1456(PF13276)mitochondrial; (mitochondrial)
398580.Dshi_2509(PF13276)(plastid)
398580.Dshi_2508(PF13276) (PF13683)
398580.Dshi_2104(PF13276) (PF13683)
398580.Dshi_1913(PF13276) (PF13683)
398580.Dshi_0464(PF13276) (PF13683)
398580.Dshi_1098PF05631(ER)
398580.Dshi_0876(PF13276) (PF13683)
398580.Dshi_3580(PF02485)
398580.Dshi_1226(PF10013)not used
398580.Dshi_2932(PF09458)
398580.Dshi_3152(PF07286)
398580.Dshi_0507(PF10609)
398580.Dshi_2486(PF08856)
398580.Dshi_2476(PF10609)
398580.Dshi_3271(PF10609)
398580.Dshi_0678(PF02485)
398580.Dshi_0610(PF07286)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================