Effective results for Methylobacterium sp. 4-46 (eggnog40)

Summary

Number of putative secreted proteins: 391
- Predicted by T4SEpre: 93
- Predicted by EffectiveELD: 50 eukaryotic-like domains, contained in 317 proteins (27 high, 290 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
426117.M446_1927+(PF13458)(mitochondrial)
426117.M446_0958(PF13276) (PF00665)mitochondrial; (mitochondrial)
426117.M446_1080(PF13692) (PF13579)ER
426117.M446_5696+(PF13458)ER
426117.M446_5389(PF13692) (PF13579)mitochondrial
426117.M446_2956(PF13692) (PF13579)(mitochondrial)
426117.M446_1055(PF13276) (PF00665)mitochondrial
426117.M446_3023(PF13458)(ER)
426117.M446_4762(PF13458)mitochondrial; (mitochondrial)
426117.M446_4765(PF12399)(mitochondrial); (plastid)
426117.M446_3254(PF10908)mitochondrial; (mitochondrial)
426117.M446_2339(PF08447)ER
426117.M446_1336(PF13458)ER
426117.M446_2837(PF03330)ER
426117.M446_5786+(ER); (plastid)
426117.M446_5431(PF13458)ER
426117.M446_4202+mitochondrial
426117.M446_5158+ER
426117.M446_5156+(ER)
426117.M446_6545(PF05239)ER
426117.M446_0262+ER
426117.M446_6489(PF13458)mitochondrial; (mitochondrial)
426117.M446_2486+ER
426117.M446_0534(PF00211)ER; (ER)
426117.M446_2126(PF13458)(ER); (mitochondrial)
426117.M446_3989(PF13692)(ER)
426117.M446_2143(PF01744)ER
426117.M446_0709(PF03330)ER
426117.M446_5530(PF13458)ER
426117.M446_3372(PF00665)(mitochondrial); plastid
426117.M446_4862(PF06764)ER
426117.M446_0722(PF00211)ER
426117.M446_1079(PF05050)mitochondrial
426117.M446_1206+ER
426117.M446_3839(PF13458)mitochondrial
426117.M446_5573(PF13458)(ER)
426117.M446_0910(PF00656)ER
426117.M446_2271(PF13458)ER
426117.M446_1415(PF03073)ER
426117.M446_5220+(mitochondrial)
426117.M446_1648(PF05239)ER
426117.M446_6338(PF13506)ER
426117.M446_3787(PF05491)(mitochondrial)
426117.M446_1339(PF13458)mitochondrial; ER
426117.M446_6414(PF13276) (PF00665)(mitochondrial)
426117.M446_6815(PF00211)mitochondrial
426117.M446_3520(PF13458)ER
426117.M446_3723(PF03209)mitochondrial
426117.M446_0292(PF01799)mitochondrial; plastid
426117.M446_0290(PF00656)ER
426117.M446_4197+(mitochondrial)
426117.M446_2734(PF11911)(ER); ER
426117.M446_3466(PF08447)ER
426117.M446_3891(PF13458)ER
426117.M446_6425(PF00211)ER
426117.M446_1126+mitochondrial; (mitochondrial)
426117.M446_0373(PF04654)ER
426117.M446_4272(PF02245)(mitochondrial)
426117.M446_4277(PF09361)(mitochondrial)
426117.M446_2530(PF13458)ER
426117.M446_2949(PF13458)ER
426117.M446_6400(PF03330)(mitochondrial)
426117.M446_2080(PF10908)ER; (ER)
426117.M446_3169(PF13458)ER
426117.M446_6408(PF13276) (PF00665)mitochondrial
426117.M446_6250(PF13458)ER
426117.M446_3613(PF00211)ER
426117.M446_3340+mitochondrial; (mitochondrial)
426117.M446_0580+ER
426117.M446_4759(PF13458)ER
426117.M446_6276(PF03330)(ER)
426117.M446_3244(PF13458)ER
426117.M446_3030(PF08447)(mitochondrial)
426117.M446_1303(PF01799)mitochondrial; (mitochondrial)
426117.M446_5798+ER
426117.M446_3095(PF11911)ER
426117.M446_3724(PF05239)(ER)
426117.M446_1930(PF12399)(mitochondrial)
426117.M446_2305(PF13458)ER
426117.M446_0097(PF11991)(mitochondrial)
426117.M446_4795(PF08795)(mitochondrial)
426117.M446_0527(PF00211)ER; (ER)
426117.M446_4691(PF08447)mitochondrial
426117.M446_1976(PF13458)(mitochondrial)
426117.M446_0757(PF13458)mitochondrial; (mitochondrial)
426117.M446_0509(PF08975)(mitochondrial)
426117.M446_2285(PF13579)(mitochondrial)
426117.M446_1954+ER; plastid
426117.M446_5718(PF05239)ER
426117.M446_0920(PF00656)ER
426117.M446_0549(PF13458)(mitochondrial)
426117.M446_0540(PF00656)ER
426117.M446_1412(PF13632)ER
426117.M446_0483(PF07250)mitochondrial
426117.M446_6884PF13551(mitochondrial)
426117.M446_3610+mitochondrial; plastid
426117.M446_1617(PF00656)ER
426117.M446_5759+ER
426117.M446_2196+(mitochondrial); (plastid)
426117.M446_0134+ER
426117.M446_0139+ER
426117.M446_4698(PF13458)ER
426117.M446_3321(PF08447)mitochondrial; (mitochondrial)
426117.M446_1677(PF08447)(mitochondrial)
426117.M446_3640(PF12399)mitochondrial
426117.M446_3643(PF13458)ER
426117.M446_1798(PF13458)ER
426117.M446_1790(PF13458)ER
426117.M446_1421(PF13458)ER
426117.M446_5935+ER
426117.M446_3994+(mitochondrial); mitochondrial
426117.M446_6606(PF13506)ER
426117.M446_2075(PF13692)mitochondrial; (mitochondrial)
426117.M446_3679+ER
426117.M446_0326(PF13458)ER
426117.M446_4536+ER
426117.M446_5055(PF06764)ER
426117.M446_1515PF13551(mitochondrial)
426117.M446_5642(PF13458)mitochondrial
426117.M446_5649(PF05239)ER
426117.M446_3558(PF08447)(ER)
426117.M446_5073(PF13458)(ER); (mitochondrial)
426117.M446_1485+(mitochondrial)
426117.M446_4287(PF13276) (PF00665)mitochondrial
426117.M446_6439(PF00211)mitochondrial; (mitochondrial)
426117.M446_3713(PF03209)ER; (ER)
426117.M446_3711(PF03073)ER
426117.M446_0002+(mitochondrial)
426117.M446_5013(PF13458)ER
426117.M446_2091+ER
426117.M446_4924(PF03330)ER
426117.M446_0029(PF00656)ER
426117.M446_0023(PF13458)mitochondrial
426117.M446_5030(PF00656)ER
426117.M446_5032(PF00656)ER
426117.M446_1054(PF13518)(plastid)
426117.M446_4011PF13936 (PF00665)
426117.M446_3000(PF08447)(mitochondrial)
426117.M446_2317+(plastid)
426117.M446_0268(PF08447)(mitochondrial)
426117.M446_2817(PF00211)(ER)
426117.M446_2489(PF08447)(ER)
426117.M446_2293(PF00211)(plastid)
426117.M446_2297+(ER)
426117.M446_0188(PF13276) (PF00665)
426117.M446_6916PF13551 (PF00665)
426117.M446_6913PF13936 (PF00665)
426117.M446_5534PF13551 (PF00665)
426117.M446_0551(PF01799)(plastid)
426117.M446_2183(PF12399)plastid
426117.M446_6409(PF13518)(plastid)
426117.M446_1476PF13551(mitochondrial)
426117.M446_2900PF13936 (PF00665)
426117.M446_1146+(mitochondrial)
426117.M446_2258+(PF09361)
426117.M446_5046(PF13692)(ER)
426117.M446_5592PF13936 (PF00665)
426117.M446_3522(PF12399)plastid
426117.M446_1464PF13551 (PF00665)
426117.M446_5722(PF13692) (PF13579)
426117.M446_1001(PF17171) (PF17172)
426117.M446_1496PF13936 (PF00665)
426117.M446_5029+(mitochondrial)
426117.M446_0582PF13936 (PF00665)
426117.M446_1720(PF13692) (PF13579)
426117.M446_1723PF13936 (PF00665)
426117.M446_4006PF13936 (PF00665)
426117.M446_2519PF13936 (PF00665)
426117.M446_2309(PF12399)(mitochondrial)
426117.M446_2798PF13551 (PF00665)
426117.M446_2801PF13936 (PF00665)
426117.M446_1978(PF12399)(plastid)
426117.M446_3999(PF13692)plastid
426117.M446_6901(PF08447)(ER)
426117.M446_2452PF13551 (PF00665)
426117.M446_1380(PF08447)(mitochondrial)
426117.M446_4387(PF04577)(plastid)
426117.M446_3368PF13936 (PF00665)
426117.M446_3114(PF08795)(mitochondrial)
426117.M446_3807PF13936 (PF00665)
426117.M446_2203(PF08447)(ER)
426117.M446_4304(PF17171) (PF17172)
426117.M446_1446PF13936 (PF00665)
426117.M446_6808(PF14701)(ER)
426117.M446_1510PF13551 (PF00665)
426117.M446_3888PF13551 (PF00665)
426117.M446_4700PF13551 (PF00665)
426117.M446_4288(PF13518)(plastid)
426117.M446_6732PF13936 (PF00665)
426117.M446_1053(PF08447)
426117.M446_4023(PF13692)
426117.M446_5196+
426117.M446_0827(PF08447)
426117.M446_4034(PF13692)
426117.M446_0596(PF12399)
426117.M446_5170(PF08447)
426117.M446_5173(PF06745)
426117.M446_4960(PF04577)
426117.M446_4782(PF13632)
426117.M446_2520(PF00665)
426117.M446_5439PF05212
426117.M446_5435(PF12399)
426117.M446_3273+
426117.M446_5336PF12142
426117.M446_6018+
426117.M446_0266+
426117.M446_4943(PF13692)
426117.M446_0087(PF13692)
426117.M446_3681(PF05239)
426117.M446_1135(PF00211)
426117.M446_2813(PF00211)
426117.M446_2811(PF02371)
426117.M446_5457(PF10013)not used
426117.M446_3478+
426117.M446_2669(PF01799)
426117.M446_6174+
426117.M446_3046(PF01799)
426117.M446_6567+
426117.M446_3851(PF02371)
426117.M446_4315+
426117.M446_2129(PF12399)
426117.M446_6603+
426117.M446_0760(PF12399)
426117.M446_2852(PF08447)
426117.M446_4645(PF13458)
426117.M446_5597+
426117.M446_5540(PF02245)
426117.M446_6939+
426117.M446_6938(PF05050)
426117.M446_1070(PF13692)
426117.M446_1453(PF02371)
426117.M446_0931(PF05239)
426117.M446_6091(PF13579)
426117.M446_6899+
426117.M446_5723(PF05050)
426117.M446_5724(PF09361)
426117.M446_1983(PF01799)
426117.M446_3160+
426117.M446_1294(PF01812)
426117.M446_0916(PF06119)
426117.M446_4501(PF05532)
426117.M446_3338(PF13276)
426117.M446_3626(PF08447)
426117.M446_5741(PF09361)
426117.M446_2212(PF09511)
426117.M446_2902(PF01812)
426117.M446_4823(PF05050)
426117.M446_4355(PF08447)
426117.M446_4172(PF02371)
426117.M446_5885(PF00211)
426117.M446_2683(PF08447)
426117.M446_5945(PF04577)
426117.M446_6772(PF00211)
426117.M446_6445(PF08447)
426117.M446_3122(PF04577)
426117.M446_1257(PF09361)
426117.M446_0784(PF09361)
426117.M446_0788(PF02245)
426117.M446_3872+
426117.M446_2000(PF12471)
426117.M446_5921(PF06745)
426117.M446_5596(PF13276)
426117.M446_5594(PF02371)
426117.M446_5595(PF00665)
426117.M446_6769+
426117.M446_0621+
426117.M446_0330+
426117.M446_5906(PF00211)
426117.M446_1810(PF04654)
426117.M446_2045(PF08447)
426117.M446_2735(PF03073)
426117.M446_4712(PF06745)
426117.M446_4711(PF08447)
426117.M446_6729+
426117.M446_4278(PF05532)not used
426117.M446_2822(PF05239)
426117.M446_2947(PF09361)
426117.M446_5639(PF12399)
426117.M446_1858(PF05532)
426117.M446_2554+
426117.M446_4733+
426117.M446_2773(PF05050)
426117.M446_1009(PF13276)
426117.M446_3346+
426117.M446_3914(PF08447)
426117.M446_6069(PF01799)
426117.M446_3769(PF13632)
426117.M446_2575(PF01799)
426117.M446_3246(PF12399)
426117.M446_5187+
426117.M446_6519+
426117.M446_4918(PF00847)
426117.M446_2510(PF02371)
426117.M446_2518(PF02371)
426117.M446_4415+
426117.M446_4215(PF08447)
426117.M446_2796(PF00211)
426117.M446_5441(PF01799)
426117.M446_1545+
426117.M446_6491(PF12399)
426117.M446_4630(PF08447)
426117.M446_4638(PF08447)
426117.M446_0253(PF04577)
426117.M446_1699(PF03959)
426117.M446_6950(PF05050)
426117.M446_2803(PF00211)
426117.M446_3072(PF01812)
426117.M446_6618(PF05239)
426117.M446_4793(PF01799)
426117.M446_2614+
426117.M446_2617(PF12399)
426117.M446_2613+
426117.M446_4423(PF00211)
426117.M446_1104(PF05491)
426117.M446_2138(PF08447)
426117.M446_2130(PF12399)
426117.M446_6902(PF08447)
426117.M446_2636+
426117.M446_4442(PF08447)
426117.M446_1539(PF05532)
426117.M446_0717(PF05532)not used
426117.M446_4124+
426117.M446_4129+
426117.M446_5383(PF05532)
426117.M446_5381(PF05532)
426117.M446_5380(PF05532)
426117.M446_0921(PF00211)
426117.M446_3364(PF00665)
426117.M446_0546(PF12399)
426117.M446_2175(PF05239)
426117.M446_1418(PF01799)
426117.M446_0533(PF00211)
426117.M446_1281(PF13692)
426117.M446_5502(PF13506)
426117.M446_3166(PF12399)
426117.M446_5697(PF01799)
426117.M446_5693(PF12399)
426117.M446_4167(PF02371)
426117.M446_0675+
426117.M446_1528(PF00211)
426117.M446_2205+
426117.M446_3138(PF01799)
426117.M446_1795(PF12399)
426117.M446_1796(PF12399)
426117.M446_5547(PF02371)
426117.M446_5237(PF09361)
426117.M446_5238(PF09361)
426117.M446_5602(PF05239)
426117.M446_6666(PF00656)
426117.M446_6150(PF13518)
426117.M446_0655(PF08447)
426117.M446_0300(PF08447)
426117.M446_3992+
426117.M446_3987(PF13692)
426117.M446_3986(PF13692)
426117.M446_3842(PF12399)
426117.M446_0257+
426117.M446_1229(PF08447)
426117.M446_1215(PF02371)
426117.M446_6826(PF02933)
426117.M446_6828+
426117.M446_1687+
426117.M446_5910(PF08447)
426117.M446_1809(PF08447)
426117.M446_3536+
426117.M446_4985(PF13579)
426117.M446_5584(PF08447)
426117.M446_2056(PF05050)
426117.M446_6110(PF08447)
426117.M446_6442(PF08447)
426117.M446_2268(PF12399)
426117.M446_3084+
426117.M446_1821+
426117.M446_1775(PF08447)
426117.M446_0288+
426117.M446_4707(PF13276)
426117.M446_4064(PF05050)
426117.M446_4014(PF02371)
426117.M446_5626(PF13518)
426117.M446_1848+
426117.M446_1710+
426117.M446_1719(PF13579)
426117.M446_4007+
426117.M446_1526(PF08447)
426117.M446_4005(PF02371)
426117.M446_6067(PF01442)
426117.M446_4927+
426117.M446_2562(PF01799)
426117.M446_5290(PF08447)
426117.M446_5293(PF00211)
426117.M446_3902(PF08447)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================