Effective results for Clostridium kluyveri DSM 555 (eggnog40)

Summary

Number of putative secreted proteins: 209
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 209 proteins (33 high, 176 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
431943.CKL_2574(PF12724) (PF13237)(mitochondrial)
431943.CKL_2578(PF12724) (PF00037)(mitochondrial); (plastid)
431943.CKL_2650(PF00438) (PF02773) (PF02772)
431943.CKL_1848(PF01381)mitochondrial
431943.CKL_3771(PF13205)ER
431943.CKL_3000(PF00465)(ER)
431943.CKL_2747(PF13205)ER
431943.CKL_2980(PF06541)ER
431943.CKL_2293(PF12724)mitochondrial
431943.CKL_2181(PF13205)ER
431943.CKL_0599(PF14566)ER
431943.CKL_2974(PF00037)(ER)
431943.CKL_2190(PF00163)(mitochondrial)
431943.CKL_2170(PF13205)ER
431943.CKL_2978(PF00465)(ER)
431943.CKL_1095PF06662ER
431943.CKL_0709(PF08367)ER
431943.CKL_0403PF06662ER
431943.CKL_2007(PF01381)(mitochondrial)
431943.CKL_1754(PF00543)(mitochondrial)
431943.CKL_1753(PF00543)(mitochondrial)
431943.CKL_1633(PF00438) (PF02773) (PF02772)
431943.CKL_3674(PF00438) (PF02773) (PF02772)
431943.CKL_3079(PF00543)(mitochondrial)
431943.CKL_1918(PF00239)(mitochondrial)
431943.CKL_3080(PF00543)(mitochondrial)
431943.CKL_0747(PF06541)ER
431943.CKL_0524(PF06541)ER; (ER)
431943.CKL_1010PF06662(mitochondrial)
431943.CKL_3478(PF06541)ER
431943.CKL_3093(PF13205)ER
431943.CKL_2869(PF00239)ER
431943.CKL_2866(PF00542)ER
431943.CKL_3314(PF01381)(mitochondrial)
431943.CKL_3313(PF01381)(mitochondrial)
431943.CKL_0320(PF12724) (PF00037)(mitochondrial)
431943.CKL_0251(PF00163)mitochondrial
431943.CKL_2896(PF00542)ER
431943.CKL_3415(PF13205)ER
431943.CKL_3416(PF10662)mitochondrial
431943.CKL_3420(PF10662)(mitochondrial)
431943.CKL_3753(PF13205)ER
431943.CKL_2023(PF00239)(mitochondrial)
431943.CKL_1989(PF03796) (PF00772)
431943.CKL_3902(PF03796) (PF00772)
431943.CKL_2620(PF00239)(mitochondrial)
431943.CKL_1892(PF03796) (PF00772)
431943.CKL_2967(PF00465)(ER)
431943.CKL_3819(PF12724) (PF00037)
431943.CKL_2928(PF01381)(mitochondrial)
431943.CKL_2459PF00148(mitochondrial)
431943.CKL_3295(PF03796) (PF00772)
431943.CKL_2065(PF00465)(plastid)
431943.CKL_1696(PF06968)
431943.CKL_2509PF00148
431943.CKL_3436(PF00465)
431943.CKL_3740(PF01633)
431943.CKL_3743(PF13353)
431943.CKL_3320(PF00239)
431943.CKL_0486(PF00958)not used
431943.CKL_1849(PF01381)
431943.CKL_0261(PF00239)
431943.CKL_0466(PF00958)
431943.CKL_2646(PF12224)
431943.CKL_2510PF00148
431943.CKL_1750(PF01381)
431943.CKL_3003(PF01381)
431943.CKL_3001(PF13353)
431943.CKL_0297(PF00239)
431943.CKL_0296(PF00239)
431943.CKL_2746(PF01381)
431943.CKL_1727(PF13276)
431943.CKL_3014(PF00465)
431943.CKL_0449(PF08367)
431943.CKL_0841(PF13237)
431943.CKL_2998(PF00037)
431943.CKL_1716(PF13276)
431943.CKL_2372(PF01381)
431943.CKL_3371(PF00543)
431943.CKL_3629(PF01381)
431943.CKL_0613(PF13353)
431943.CKL_0057(PF01381)
431943.CKL_0431(PF00543)
431943.CKL_0543(PF00465)
431943.CKL_2522(PF13276)
431943.CKL_3829(PF06968)
431943.CKL_0605(PF06968)
431943.CKL_0736(PF00465)
431943.CKL_0134(PF13353)
431943.CKL_0132(PF01381)
431943.CKL_0427(PF10609)
431943.CKL_2750(PF13276)
431943.CKL_1177(PF13246)
431943.CKL_1607(PF01381)
431943.CKL_3737(PF01633)
431943.CKL_3730(PF01633)
431943.CKL_2622(PF00239)
431943.CKL_0632(PF01592)
431943.CKL_1947(PF01381)
431943.CKL_0141(PF00037)
431943.CKL_0891(PF13246)
431943.CKL_2941(PF13151)
431943.CKL_2945(PF01381)
431943.CKL_2946(PF01381)
431943.CKL_2016(PF01381)
431943.CKL_2012(PF01381)
431943.CKL_1614(PF00465)
431943.CKL_3831(PF00239)
431943.CKL_2832(PF01381)
431943.CKL_2237(PF13237)
431943.CKL_0626(PF00037)
431943.CKL_0627(PF00037)
431943.CKL_0624(PF10609)
431943.CKL_2005(PF01381)
431943.CKL_2006(PF01381)
431943.CKL_2489(PF01381)
431943.CKL_1035PF00148
431943.CKL_3445(PF13276)
431943.CKL_3843(PF00239)
431943.CKL_3842(PF00239)
431943.CKL_3840(PF00239)
431943.CKL_2827(PF01381)
431943.CKL_3532(PF00239)
431943.CKL_2829(PF12724)
431943.CKL_3661(PF01381)
431943.CKL_2220(PF13353)
431943.CKL_1106(PF13353)
431943.CKL_0215(PF00542)
431943.CKL_1034PF00148
431943.CKL_1743PF00148
431943.CKL_1747PF00148
431943.CKL_1744PF00148
431943.CKL_1745PF00148
431943.CKL_2728(PF13205)
431943.CKL_2104(PF13353)
431943.CKL_1636(PF06968)
431943.CKL_3671PF00148
431943.CKL_3672PF00148
431943.CKL_3078PF00148
431943.CKL_3076PF00148
431943.CKL_3077PF00148
431943.CKL_3075PF00148
431943.CKL_1912(PF01381)
431943.CKL_1914(PF01381)
431943.CKL_0375(PF13353)
431943.CKL_0376(PF13353)
431943.CKL_0370PF00148
431943.CKL_0372PF00148
431943.CKL_1821(PF01381)
431943.CKL_2937(PF13276)
431943.CKL_1646(PF01381)
431943.CKL_3649(PF00037)
431943.CKL_3643(PF01592)
431943.CKL_0349(PF01381)
431943.CKL_1831(PF13353)
431943.CKL_0527PF00148
431943.CKL_0839(PF00037)
431943.CKL_0838(PF00037)
431943.CKL_0832(PF01592)
431943.CKL_3875(PF12224)
431943.CKL_2870(PF13276)
431943.CKL_2059(PF00037)
431943.CKL_2279(PF01381)
431943.CKL_3475(PF13353)
431943.CKL_3651(PF10609)
431943.CKL_1930(PF01381)
431943.CKL_1067(PF00465)
431943.CKL_1797(PF13237)
431943.CKL_1069(PF00465)
431943.CKL_0825PF00148
431943.CKL_0826PF00148
431943.CKL_2460PF00148
431943.CKL_2860(PF00239)
431943.CKL_2864(PF01381)
431943.CKL_3317(PF01381)
431943.CKL_3316(PF01381)
431943.CKL_3790(PF00037)not used
431943.CKL_3222(PF01381)
431943.CKL_3138(PF13353)
431943.CKL_1923(PF01381)
431943.CKL_1920(PF01381)
431943.CKL_0322(PF13353)
431943.CKL_0321(PF01381)
431943.CKL_1810(PF01338)
431943.CKL_1251(PF12724)
431943.CKL_2675(PF13276)
431943.CKL_1075(PF00465)
431943.CKL_1077(PF00465)
431943.CKL_1078(PF00465)
431943.CKL_2781PF00148
431943.CKL_2780PF00148
431943.CKL_2785PF00148
431943.CKL_2784PF00148
431943.CKL_3232(PF00239)
431943.CKL_2326(PF00037)
431943.CKL_1264(PF13237)
431943.CKL_1310(PF01381)
431943.CKL_1319(PF01592)
431943.CKL_2405(PF00465)
431943.CKL_1048PF00148
431943.CKL_1044PF00148
431943.CKL_1047PF00148
431943.CKL_1043PF00148
431943.CKL_1042PF00148
431943.CKL_2538(PF13276)
431943.CKL_3425(PF00465)
431943.CKL_3756(PF13353)
431943.CKL_0494(PF13276)
431943.CKL_0492(PF01381)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================